Erwinia rhapontici: LJN55_18360
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Entry
LJN55_18360 CDS
T08392
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
erp
Erwinia rhapontici
Pathway
erp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
erp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LJN55_18360 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
erp03400
]
LJN55_18360 (recB)
Enzymes [BR:
erp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LJN55_18360 (recB)
DNA repair and recombination proteins [BR:
erp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LJN55_18360 (recB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PDDEXK_1
AAA_11
Motif
Other DBs
NCBI-ProteinID:
UDQ79391
LinkDB
All DBs
Position
complement(3968294..3971830)
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AA seq
1178 aa
AA seq
DB search
MNQQVPERLEPLTLPLHGERLIEASAGTGKTFTIGLLYLRLLLGLGGEAAFSRPLSVEEI
LVVTFTEAATAELRGRIRANIHELRIACVRGESHNPMLSALMSEVADLSQAASMLLAAER
QMDEAGIFTIHGFCQRMLNLNAFESGMLFEQELIEDETPLRRRATADFWRRHCYPLPLPV
ARVVRQLWEGPEQLLKTLSPWLGGEAPALKSAPDRDETLEQRHEKIIAHIDLLKQAWLAA
GDLQSLVESSGVDKRSYSSKHLPNWLEKITQWAQAATEDYEVAKDLERFGQRVLSDKTKK
GEPPRHPLFDQIDAFLAEPLSLRDLVIARALYEVRFVTQQEKRLHAQMGFDDLLGRFDAA
LQQPGGAALAAAIRQRYPVALIDEFQDTDPQQYRIFHTLYARQTDSALLLIGDPKQAIYA
FRGADIFTYMKARAEVSAHYTLETNWRSSPAMVEGVNKLFLHQVNPFLFNDIPFITVSPA
APNATLSFSLEGAEQPALQFWLQPGEGVGVSDYQQFMARQCAAEIRRWLSAGQQGTALIG
KAGKQQAVRASDITILVRSRSEASVMREALNGLAIPSVYLSNRDSVFTTPEAREMLWLLQ
AVLAPEQERVLRSALASSLLGLDARALDALNQDERAWDALVDEFAEYRQRWLKRGVLPML
RELMMKRHIAENLLASDSGERRLTDLLHLGELLQEAAATLDSEHALVRWLAQQVEQPDGQ
VANQQLRLESDRNLVQIVTIHKSKGLQYPLVWLPFVANFREAENGVYHDRQTFEALLDLQ
QGEESVALAEQERLAEDLRLLYVALTRSVYHCSVGIAPLIKGTRKKEGDSDLHRSALGYL
IQQGEAADAAGLRTALLSLQSDATAVVIPQEPDDTPWQPQHEDPQRLSSQQLQRTLRDDW
RVTSYSGLQQHGHSPALDLLPRLDVDAVGEASDELLPQLTPHTFPRGAAPGTFLHGLFET
LEFTAPLEDDWLALQLSRQGLDEAWHPVMHDWLGRILHTPLNDSGVSLDQLAPEARRVEL
QFYLPISRLLTADALDQVVRQDPLSADCPPLDFYQVQGMLKGFIDLIFCWQGKYYLLDYK
SNWLGEDSSAYTRPAMAQAMQSHRYDLQYQLYTLALHRYLRHRLADYDYERHFGGVIYLF
LRGLDGTEGSNGIYSTRPQADFVTALDQLFANNAEQGA
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaacaggtgcctgaaaggcttgagccgttaaccctgccactgcacggcgagcgg
ctgattgaggcgtccgccggaaccgggaaaaccttcaccatcgggctgctctatctgcgc
ctgctgttggggttgggcggtgaagccgcgttcagtcgcccgttgtcagtggaagagatt
ctggttgtgacgtttaccgaggcggcaacggcggagctgcgcgggcgtatccgtgccaat
atccacgagctgcgcattgcctgcgttcgcggtgaaagtcataacccgatgctctcggct
ctgatgtctgaagtggcggatttatcgcaggcagcatcaatgctgctggccgcagaacgg
cagatggatgaggccggtatctttactattcacggtttctgccagcgtatgctgaatctc
aacgcctttgaatccggcatgctgtttgaacaggagttgattgaggacgaaaccccgttg
cgccgtcgcgcaacggccgatttctggcgtcgtcactgctatccgttgccgctgccagtg
gcgcgcgtggtgcgtcaactgtgggaagggccggagcaactgctgaaaacgctttcgccg
tggctggggggagaagcgccagcgctcaaatcagcgccagaccgcgatgaaacgctggag
cagcgccatgagaaaatcattgcccacatcgacctgctgaaacaggcatggctggcggca
ggcgatttgcagtcgctggttgagtcctccggtgtggacaagcgcagttacagtagtaag
cacttacctaactggctggaaaaaattacccagtgggcgcaggcagcaacggaagactat
gaggtcgcgaaagaccttgagcgttttggtcagcgcgtgctgtcggataaaaccaagaaa
ggcgagccgccacggcatccgttgtttgaccagattgatgccttcctcgcagagcctctg
tcattgcgcgacctggtgattgcccgggcgttgtacgaggtgcgttttgtgacccagcag
gagaaacgcctgcatgcgcagatggggtttgatgacttgctggggcgttttgatgctgca
ttgcagcagccggggggggccgcgctggcagcggcaatccgtcagcgttacccggtcgcc
ctgatcgatgaattccaggataccgatccccagcaataccgcatcttccacacgctgtat
gcgcggcagacagacagtgcactgctgctgatcggcgatccgaaacaggctatctacgcc
ttccgtggtgcggatatctttacctatatgaaagcgcgagcagaagttagtgctcactat
acgcttgagactaactggcgctcatcaccggcgatggtggagggtgttaataagctgttt
ttgcaccaggtaaacccgtttttattcaatgatatcccttttattaccgtcagcccggca
gcgccgaacgccaccctgagctttagcctggagggagcagaacagccggctttgcagttc
tggttacagcccggtgagggcgtcggggtcagtgattaccagcagtttatggcgcgccag
tgtgccgcggaaattcgccgctggctcagtgccgggcagcagggcaccgcgctgatcggt
aaggccggtaaacagcaggcggtgcgtgcctcggatatcacgattctggtgcgtagccgt
agtgaggcctcggtgatgcgtgaggcattaaacggcctggcaatcccctcggtgtatctc
tccaaccgtgacagcgtatttaccacaccggaagcccgcgaaatgctgtggctgttgcag
gcggtgctggcaccggagcaggagcgtgttctgcgcagtgcgctggccagcagcctgctg
ggccttgatgcccgggcactggatgcgctgaaccaggacgaacgggcctgggatgccctg
gtggatgaatttgccgagtatcgacagcgctggttaaagcgtggcgtgctgccgatgctg
cgtgagctgatgatgaaacggcatattgcggaaaatctcctggcgtccgacagcggggaa
cgccgtctgaccgatttgttgcatctgggtgaactgttgcaggaggctgcagccaccctc
gacagtgaacatgcgctggtgcgttggcttgctcagcaggtggaacagccggacgggcaa
gtggctaaccagcagttgcgtctggagagcgatcgtaacctggtgcagattgtcaccatc
cataaatcgaaaggtttacagtatccgttggtgtggttgccatttgttgccaacttccgc
gaggcggaaaacggcgtctatcacgatcgccagaccttcgaagcgttgctcgacttacaa
caaggggaagagagcgtggcgctggccgagcaggagaggctggcagaagatttgcgcctg
ctgtatgtggcgctgacgcgctcggtttaccattgtagcgtcggtattgctcccctgatt
aaaggcacacgtaaaaaagagggcgacagtgacctgcaccgcagcgcgttgggctacttg
atccagcaaggcgaagcggcagatgccgcaggattaaggacggcactgctgagcctgcaa
agtgatgcgaccgcggtcgtgattccgcaggaaccggacgatacgccgtggcagccacag
cacgaagacccacagcgcctgagcagccagcagttacaacgtaccctgcgtgatgactgg
cgagtgaccagttattccggcctgcaacagcacgggcattcgcccgcgctggacctgctg
ccccggctggatgttgatgcggtgggcgaagccagcgatgagctgttaccacagcttacg
ccgcacactttcccgcgcggagcggcaccgggcaccttcctgcatggattgttcgaaacc
ctcgaatttaccgcaccgttggaagatgactggctggcgcttcagcttagtcgtcagggg
ctggacgaggcctggcatccggtgatgcatgactggctcgggcgtattttgcatacgccg
ctcaatgacagtggcgtgagcctggatcagcttgcacctgaagcccggcgagttgagctg
caattttatctgccgatttcacgtcttctgacggctgatgcactggaccaggtggtgcgc
caggacccgctttcggctgactgcccgccgctcgatttttatcaggtgcagggcatgctg
aaaggctttatcgacttgatcttttgctggcagggaaaatattacctgctggattacaaa
tcgaactggctgggtgaggacagtagcgcttacacgcgtccggctatggcgcaggcgatg
cagtcacatcgctacgacctgcagtaccagctttacacgctggcgctgcatcgctatctg
cggcaccgtctggcggactatgactacgaacgtcatttcggtggcgtgatttatctgttc
ctgcgtggcctggacgggacggagggaagcaatggcatttacagcacgcggccccaggca
gactttgtcactgcgcttgaccagctgtttgctaacaacgcggagcagggcgcatga
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