Erwinia rhapontici: LJN55_20760
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Entry
LJN55_20760 CDS
T08392
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
erp
Erwinia rhapontici
Pathway
erp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
erp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LJN55_20760 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
erp03019
]
LJN55_20760 (rnr)
03016 Transfer RNA biogenesis [BR:
erp03016
]
LJN55_20760 (rnr)
Enzymes [BR:
erp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LJN55_20760 (rnr)
Messenger RNA biogenesis [BR:
erp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LJN55_20760 (rnr)
Transfer RNA biogenesis [BR:
erp03016
]
Prokaryotic type
tRNA degradation factors
LJN55_20760 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
Rho_RNA_bind
HTH_20
YqfQ
Motif
Other DBs
NCBI-ProteinID:
UDQ79827
LinkDB
All DBs
Position
complement(4491787..4494231)
Genome browser
AA seq
814 aa
AA seq
DB search
MSHDPFQEREAEKYENPIPSREFILAHLDKREKPASREELAEELAISGEEQTEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGKVIGHRDGFGFLRIEGSKDDLYLSAEQMKMCMH
GDMILAQAMGADRKGRREARVVRVVEPRNAQIVGRYFTDSGVGFVVPDDSRLSFDILIPA
EELMGARMGFVVVVELTQRPTRRSKAVGKVVEVLGDNMGTSMAVDMALRTHDIPHEWPEA
LEKQIAHLSEEVPEDAKQGRVDLRDLPLVTIDGEDARDFDDAVFCERKRGGGWRLWVAIA
DVSYYVRPGTPLDDEAVNRGTSVYFPSQVVPMLPEVLSNGLCSLNPEVDRLCMVCEMTIS
STGKLTGYKHYEAVMNSFARLTYNKVWNILQGHQELRQQYEPLVKDLEELHRMYLALEKS
REQRGGISFETDEAKFIFNADRRIERVEQVSRNDAHKLIEECMILANIASARYVEKNNEP
ALFRDHDRPGDESIKSFRSVLNELGLTLPGGDKPQPVDYSALLSQIAGRQDHEMLQTMLL
RSMKQAVYDPENRGHFGLALASYAHFTSPIRRYPDLLLHRAIKYLLAKEAGTLQGNTTPT
GGFHYEMPQMLQLGQHCSLTERRADEATRDVADWLKCDFMQDQVGETFTGVISSVTGFGF
FVRLTDLFIDGLVHVSTLDNDYYRFDAIGQRLIGESGGRTYRLGDTVEVRVDAVHMDERK
IDFALISSSRKPRGEGKTEREREKRAAPKNSGNRRRAPRKGANFEPDSAFRPAKAADGAA
PAAAKEKKPRKPSDKTRKIGAATRAKRAKKTDGA
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
atgtcacacgatccctttcaggaacgagaagctgaaaagtacgaaaaccctattccaagc
cgcgagttcattcttgcccacctggacaaacgtgaaaaaccggccagccgtgaagagctg
gcagaagaattagcgataagcggagaagagcagactgaagcgctgcgtcgccgcctgcgc
gccatggagcgtgacgggcagttagtgtttacccgccgccagtgctacgcgctgccggaa
cgcctggacctgttaaaaggtaaagtcatcggtcaccgcgatggcttcggcttcttacgc
attgaaggcagcaaagatgacctttatctctctgccgaacagatgaaaatgtgcatgcac
ggggacatgatcctcgcgcaggccatgggcgctgaccgtaaaggtcgccgcgaagcacgc
gtggttcgcgtggttgaaccgcgtaacgcccaaattgttggccgctacttcactgactcc
ggtgtaggttttgtggtgccggatgacagccgtctgagcttcgacatcctgatcccggct
gaagagctgatgggtgctcgcatgggctttgtggtggtggtggagctgactcagcgtccc
acccgtcgtagcaaagccgtgggtaaagtcgttgaagtgctcggcgacaatatgggcacc
agcatggccgtcgatatggcgctgcgcacccatgatattccgcatgaatggccggaagcg
ctggaaaaacagattgctcatctgagcgaagaagtgccggaagatgccaaacagggccgc
gttgatctgcgcgatctgccgctggtgaccatcgatggcgaagacgcacgtgactttgat
gacgccgttttctgtgaacgtaaacgcggcggcggctggcgtctgtgggtagcgatcgcc
gacgtgagctactacgtgcgtcctggcaccccgctggacgatgaagcggttaaccgtggt
acttcggtgtacttcccgtctcaggtggtgccaatgctgccggaagtgctgtccaacggc
ctgtgttccctgaacccggaagtggaccgtctgtgtatggtgtgcgagatgaccatctcc
tccaccggtaagctgaccggctataagcactacgaagcggtgatgaactccttcgcgcgt
ctgacgtacaacaaagtgtggaacatcctccaggggcatcaggaactgcgccagcagtat
gagccgctggtaaaagaccttgaagagctgcaccgcatgtacctggcgctggaaaagtcg
cgtgaacagcgtggcggtatctcgtttgaaaccgatgaagcgaaatttatcttcaatgcc
gatcgtcgtattgaacgcgtggagcaggtttctcgtaacgatgcgcacaagctgattgaa
gagtgcatgatcttagcgaacattgcctcggcgcgttacgttgagaaaaacaacgagcca
gcgctgttccgcgatcacgaccgtccaggcgatgaaagcatcaagagcttccgttccgtg
ctgaatgaactgggcctgacgctgccgggtggcgataagccgcagccggtcgattactca
gcgctgctgagccagatcgcaggtcgtcaggatcacgagatgctgcaaaccatgctgctg
cgttcgatgaagcaggcggtttatgacccggaaaaccgtggccactttggcctggcgctg
gcgtcctatgcgcactttacgtcgcctattcgtcgttaccctgatctgctgttacaccgt
gccatcaagtatctgctggcgaaagaagcaggcaccttgcagggcaataccaccccaacg
ggcggattccactacgagatgccgcagatgctgcaactgggccagcactgttcgctgaca
gagcgccgcgcggatgaagcgacccgtgatgttgcggactggctgaagtgtgactttatg
caggatcaggtcggggaaacctttactggcgtgatctccagcgtgaccgggtttggcttc
tttgtacgtctgactgacctgtttatcgacggtctggttcatgtgtctaccctggataat
gactactatcgctttgatgcgataggtcagcgtctgatcggtgaatccggcggccgtacc
tatcgcctcggcgacacggtagaagtgcgtgttgatgcggtgcatatggacgaacgtaag
atcgacttcgccctgatctcaagcagccgtaaaccgcgtggcgaagggaaaaccgaacgc
gaacgcgaaaaacgtgcggcaccgaagaacagcggcaaccgccgtcgtgcaccgcgcaaa
ggggccaactttgagccggacagcgctttccgtccggccaaagccgctgacggtgctgct
cccgccgccgcgaaagagaaaaaaccgcgtaagccatcggataaaacccgtaaaatcggt
gctgccactcgtgcgaagcgggcgaagaaaaccgacggcgcataa
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