Erwinia rhapontici: LJN55_21965
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Entry
LJN55_21965 CDS
T08392
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
erp
Erwinia rhapontici
Pathway
erp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
erp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LJN55_21965 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
erp03019
]
LJN55_21965 (recQ)
03400 DNA repair and recombination proteins [BR:
erp03400
]
LJN55_21965 (recQ)
Enzymes [BR:
erp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LJN55_21965 (recQ)
Messenger RNA biogenesis [BR:
erp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LJN55_21965 (recQ)
DNA repair and recombination proteins [BR:
erp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LJN55_21965 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
UDQ80040
LinkDB
All DBs
Position
complement(4771577..4773409)
Genome browser
AA seq
610 aa
AA seq
DB search
MSTAAVINKETLAEQVLRDTFGYQQFRPGQQTIIQESLNGRDCLVVMPTGGGKSLCYQIP
ALVREGLTLVVSPLISLMKDQVDQLLANGVAAACLNSTQNREEQQEVMAGCRTGRIRLLY
IAPERLMMDNFLEQLTHWNPAMLAVDEAHCISQWGHDFRPEYGALGQLRHRLPDVPVMAL
TATADETTRNDIARLLQLDDPLIQVSSFDRPNIRYTLVEKFKPTEQLLRYVQDQRGKCGI
IYCNSRAKVEDTAARLQSRGLSVGAYHAGMDNAHRAHVQEAFQRDDLQIVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEALLLYDPADMAWLRKCLEEKTPGPL
QDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQQPCDNCDICLDPPRRYDGLVEAQKAL
SCIYRVGQRFGMGYIVEILRGANNQRIRDMQHDKLPVYGIGREQSHEHWTSVLRQLIHLG
LVTQNIAMHSALQLTEAARPTLRGEVPLMLAVPRLVSIKPRNSSQKSYGGSYDRKLFAKL
RKLRKSIADEANVPPYVVFNDATLIEMAEQMPLTASEMLSVNGVGHKKLERFGRPFMVMI
KEHVDGDDDE
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
gtgtctacggcagcagtcatcaataaagaaacgctggcagagcaggtattacgcgatacc
ttcggctatcagcagtttcgtccggggcaacaaaccatcattcaggagtcgctcaacggg
cgtgactgtctggtcgttatgccaaccggcggcggaaaatcactctgttatcagatccct
gcgctggtgcgtgaggggctgacgctggtggtgtcgccgttgatctcgttgatgaaagac
caggtggaccaactgctggcaaacggcgttgcggcggcctgcctcaattcgacgcagaac
cgtgaagagcagcaggaagtgatggcaggctgccgtaccggtcgcatccgtctactgtac
attgcccctgaacgtctgatgatggacaacttcctcgagcagctgacgcactggaatccg
gcgatgctggcggtggatgaagcccactgtatttcccagtggggccacgacttccgcccg
gaatacggtgcgctgggccagctacgtcatcgcctgccggatgtcccggtgatggcgctg
accgccaccgccgatgaaaccacgcgtaacgacattgcccgtctgctgcagcttgatgac
ccgctcatccaggtcagtagctttgaccgccccaatatccgctatacgctggtggaaaaa
ttcaaacctaccgaacagctgctgcgctatgtgcaggatcagcgcggcaagtgcggcatc
atttactgtaacagccgggccaaagtggaagacaccgcagcccgtctgcaaagccgtggc
ctgagcgttggcgcctatcatgcgggcatggataacgcacaccgtgctcatgtgcaggaa
gccttccagcgcgatgacctgcaaatcgtggtggcgaccgtggcttttggtatgggcatt
aacaaacccaacgtgcgttttgtggtgcactttgatatcccgcgcaatatcgaatcctac
tatcaggaaaccgggcgtgcggggcgtgatggcctgccagccgaggcgctgctgctgtat
gatccggccgatatggcctggttgcgtaagtgtctggaagagaaaacaccggggccgcta
caggatattgaacgccataagctgaatgcgatgggtgcgtttgccgaagcgcagacctgc
cgtcgtctggtcttgctgaactattttggtgaggggcgtcagcagccttgcgacaactgc
gatatctgccttgatccaccgcgccgttatgatggcctggtcgaggcgcaaaaagcactc
tcctgtatttatcgcgttgggcagcgtttcgggatggggtatatcgtcgagatcctgcgc
ggcgccaataaccagcgcatccgcgatatgcagcacgacaaattaccggtgtatggcatc
ggccgtgagcagagccatgagcactggaccagcgtgttacgccagttgattcaccttggg
ctggtgacgcaaaacatcgccatgcactcagcattacagctgacggaagccgcacgcccc
accttacgtggtgaagtgccgctgatgctggcggttcctcgcctggtgagtattaaaccg
cgtaacagcagccagaaatcctatggcggaagttatgaccgcaagctgtttgccaaacta
cgcaagctgcgtaaatccatcgccgatgaagccaatgttccgccatatgtggtgtttaac
gatgcaacgctgattgaaatggcggagcaaatgccgctgacagcatccgagatgttgagt
gtgaatggcgtcgggcataagaagctggagcgttttggcaggccgtttatggtgatgatc
aaagagcatgtcgacggtgacgacgacgagtaa
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