Erythrobacter sp. BLCC-B19: PS060_05160
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Entry
PS060_05160 CDS
T10682
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
erq Erythrobacter sp. BLCC-B19
Brite
KEGG Orthology (KO) [BR:
erq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
erq03016
]
PS060_05160
Enzymes [BR:
erq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
PS060_05160
Transfer RNA biogenesis [BR:
erq03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
PS060_05160
Prokaryotic type
tRNA splicing ligases
PS060_05160
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
WDA42204
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All DBs
Position
1132079..1133305
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AA seq
408 aa
AA seq
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MTQTTYEFHQHEGGAPIKMWTRGVPVEDEARAQLARAAQMPFIFKHVAAMPDVHVGIGAT
VGSVIPTKGAVIPAAVGVDIGCGMMAARTSLVASDLPDNLAGIRSAIEAAVPHGRSVGRG
KRDKGAWGEPPRVVVDAWAKLAERFGRIVAKHPRLRNTNNLMHLGTLGTGNHFIELCLDE
EQRVWVMLHSGSRGVGNAIGTFFIELAKQDMRKWHINLPDQDLAYFPEGTDHFDDYVEAV
EWAQDFAKLNRHVMMAHVIDALRSQIAKPFDAECEAVNCHHNYVTREHHFGENVLVTRKG
AVRAAKGTLGIIPGSMGAKSFIVRGLGNPESFDSCSHGAGRVMSRTAAKKLVTLDEHLAD
TAGVECRKDEGVIDETPKAYKPIEAVMAAQADLVEIVHTLKQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgacgcagaccacctacgaattccaccagcacgaaggcggagcgccgatcaagatgtgg
acgcgcggcgtgcccgtggaagacgaggcgcgcgcgcagctcgcgcgggcggcgcagatg
ccgttcatcttcaagcacgtggccgccatgcccgacgttcacgtcgggatcggcgcgacc
gtgggctcggtgatcccgaccaagggcgcggtgatcccggccgcggtcggcgtcgatatc
ggctgcgggatgatggctgcgcgcacctcgctcgtcgcgagcgatctgccggacaacctt
gcgggcatccgctcggcgatcgaggcggcggtgccgcacgggcgcagcgtggggcgcggc
aagcgtgacaagggcgcgtggggcgaaccgccccgcgtggtggtcgacgcctgggcaaag
ctcgccgaacggttcggccggatcgtcgccaagcacccgcggctgcgcaacaccaacaac
ctcatgcacctcggcacgctggggacggggaaccacttcatcgaactgtgcctcgacgag
gagcagcgcgtgtgggtgatgctccattccggctcgcggggtgtgggcaacgcgatcggc
acgttcttcatcgagctggccaagcaggatatgcgcaagtggcacatcaacctgcctgac
caggacctcgcctacttccccgaaggaaccgaccatttcgacgactatgtcgaagcggtc
gaatgggcgcaggacttcgccaagctcaaccggcacgtgatgatggcgcacgtgatcgac
gcgctgcgcagccagatcgccaagcccttcgatgcggagtgcgaggcggtgaactgccac
cacaactacgtgacgcgcgagcatcacttcggcgaaaacgtgctcgtcacccgcaagggg
gcggtgcgcgcggccaaggggacgctggggatcattccgggttcgatgggcgcgaagagc
ttcatcgtgcgcgggctgggcaaccctgaaagcttcgacagctgctcgcacggggcaggc
cgggtgatgagccgaaccgcggccaagaagctcgtgaccctcgacgaacacctcgccgat
accgccggggtcgaatgccgcaaggacgaaggcgtgattgatgaaacgcccaaggcctac
aagccgatcgaagccgtgatggccgcgcaggccgatctggtggagatcgtccataccttg
aagcaggtggtgtgcgtgaaggggtga
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