Erythrobacter sp. BLCC-B19: PS060_11795
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Entry
PS060_11795 CDS
T10682
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
erq Erythrobacter sp. BLCC-B19
Brite
KEGG Orthology (KO) [BR:
erq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
erq03019
]
PS060_11795 (hrpB)
Enzymes [BR:
erq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PS060_11795 (hrpB)
Messenger RNA biogenesis [BR:
erq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PS060_11795 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
HA2_N
AAA_30
Flavi_DEAD
AAA_19
Cas3-like_C_2
AAA_22
ResIII
Motif
Other DBs
NCBI-ProteinID:
WDA40240
LinkDB
All DBs
Position
2544349..2546775
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AA seq
808 aa
AA seq
DB search
MSLDLPIHAVLPQICAALAGEGAGVLIAPPGAGKTTAVAPAILGEAWCSGQIIMTSPRRV
AARAAAERMAEMLGEKPGETVGYMTRLDSKVSSKTRILVVTEAILVNRLVEDPELPGVSA
LLFDEAHERALDSDLGLALALETRAVLREDLRVLVMSATIDGARFSRLLGEGAPIIESEG
RSFPLTIKWLGGDASLAIEDRMAAAVMTAWGEESGDILAFLPGVREIERVRERLEARLAG
TPIHPLHGQIEPAAQRAAIRRDPDGRRRIVLATAIAETSLTLDGVSVVVDSGLARLAEFD
RAAGTTHLVTRRASQASATQRAGRAARQGPGVAYRLWEEAAHAGLPPFAPPEIIQADLAP
LLLRLAKWGTADPASLPWLDPPPEPSVAAARRALEALGALDAGGRITALGEAIAALPMSP
DQAAAVLHGAAAGVGEDAARLVMLLQERGLGGRGEDLLQRLARWRSDRAPRSTAAAGIAR
GWAGQAAKLTGVIGEAGAQDAAEALALARPDFVARRRDPSGEHWISAGGRGYILDPAAPL
ARAEWIVIGDAQGQAKGARITAGAELSPDRIGALFAKELAERITTRWNKEKNRVEARRER
RLGAIVLASTPEPAPDPALLVDILVEKALEKLGELLPPGFLARARFAGVDALSPESLRAR
AADWLVPLLSGRRDCDLPPHRFAEAALGLLDWNARQALDRAAPTHFTSPADTRHAIDYAG
DDAPSVEVRVQGVFGLDTHPMIGSTPLLLKLTSPGGRPVQSTRDLPGFWRGSWRDVVKDM
KGRYPKHRWPDQPWLEKPSMKTKNAFKG
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
gtgagcctcgaccttcccatccacgccgttttgccgcaaatctgcgccgcgctagcgggc
gaaggtgcgggcgtgctgatcgcgccgccgggagcgggcaagaccaccgcggtcgcgccc
gcaatactgggcgaggcgtggtgcagcggccagatcatcatgacctcgccccgccgcgtc
gccgcccgcgctgcggccgaacggatggcggaaatgctgggcgagaagccgggcgagacg
gtcggctacatgacccggctcgacagcaaggtctcttcgaagacccgcatccttgtcgtg
accgaggcgattctcgtgaaccggctggtggaagacccggagcttcccggcgtgtccgcg
ctgctgttcgacgaggcgcatgaacgcgcgctcgacagcgatctcgggctcgcgctcgcg
ctcgaaacgcgcgccgtgctgcgcgaggatttgcgcgtgctggtgatgtcggccaccatc
gacggcgcgcgtttctctcggctgctgggcgagggcgcgccgatcatcgaaagcgagggg
cgtagctttcctctgacaatcaaatggcttggcggcgatgcctcgctcgcgatcgaggat
cgcatggcggcggcggtgatgaccgcatggggcgaggagagtggcgatatcctcgctttc
ttgcccggcgtgcgcgagatcgagcgggtgcgcgaacggctggaggcgcgcctcgccggc
accccgatccacccgctccacggccagatcgaacctgctgcccagcgcgccgcgatccgc
cgcgatcccgatggccggcgccggatcgtgctggcgacagcgattgcggaaacctcgctt
acgctcgacggggtgagtgttgtggtcgacagcggccttgcaagactcgccgagttcgac
cgcgcggcgggcaccacccacctcgtcacccgccgcgcctcgcaagcgtcagcaacgcag
cgggcggggcgtgcggcgcggcaggggccgggggtggcttaccgcttgtgggaggaggcc
gcgcacgcgggtctgccgcctttcgcgccgcccgaaatcatccaggccgaccttgccccg
cttttgctgcggcttgcgaagtgggggacggcagacccggccagcctgccctggctcgat
ccgccgcccgaaccctccgtcgccgccgcgcggcgcgcattggaggcgctgggcgcgctc
gatgcgggcgggcggattaccgctctgggagaggccatcgctgcgcttccgatgtcgccc
gatcaggccgctgccgtgctccacggtgcggcggcgggcgtgggcgaggatgcggcgcgg
ctggtgatgctgttgcaggagcgcgggctgggcgggcgcggcgaggacttgctccaacgc
ctcgcgcgctggcgcagcgaccgcgcgccgcgcagcaccgcggcggcagggatcgcgcgc
ggctgggccgggcaggcggccaagctcaccggagtgatcggcgaagccggcgcgcaggac
gccgccgaagcgctggcgctggcccgccccgatttcgtcgcccgccgccgcgatccttcg
ggcgagcactggatcagcgccggggggcggggctacatcctcgatcccgccgcgccgctc
gcccgcgctgagtggatcgtgattggcgatgcgcaggggcaggccaagggcgcgcggatc
acggcaggggcggaactctcccccgaccggatcggtgccctgtttgccaaggaacttgca
gagcgcatcacaacccgctggaacaaggaaaagaaccgggtcgaggcgcggcgcgaacgg
cgacttggggcgatcgttctggcgagcacccccgaacccgcgcccgatcccgcgctgctt
gtggatatccttgtggagaaggcgctggagaagctgggggaactgctgccccccggcttt
ctcgcccgtgcccgctttgccggggtcgatgcactctcgcccgagagccttcgcgcccgc
gctgccgactggctcgtgccgttgctctcaggccgccgcgattgcgatctgcccccgcac
cgctttgccgaggccgcgctcggcttgctcgactggaacgcgcgtcaagcgctcgaccgt
gccgcgccgacccacttcacctcgcccgccgatacccgccatgcgatcgactatgccggc
gacgacgcgccgagtgtcgaggtgcgggtgcagggtgtgttcgggctcgatacgcacccg
atgatcggcagcacgccgctcttgctcaagctcaccagccccggcgggcgcccggtgcaa
tcgacccgcgacctccccggcttctggcgcggcagctggcgcgatgtggtgaaggacatg
aagggccgctatcccaagcaccgctggcccgaccagccgtggctcgaaaagccgagcatg
aagaccaaaaacgcgtttaaaggttag
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