Erythrobacter sp. BLCC-B19: PS060_14040
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Entry
PS060_14040 CDS
T10682
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
erq Erythrobacter sp. BLCC-B19
Pathway
erq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
erq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PS060_14040 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
erq03019
]
PS060_14040 (rnr)
03016 Transfer RNA biogenesis [BR:
erq03016
]
PS060_14040 (rnr)
Enzymes [BR:
erq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PS060_14040 (rnr)
Messenger RNA biogenesis [BR:
erq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PS060_14040 (rnr)
Transfer RNA biogenesis [BR:
erq03016
]
Prokaryotic type
tRNA degradation factors
PS060_14040 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
Motif
Other DBs
NCBI-ProteinID:
WDA40673
LinkDB
All DBs
Position
2984447..2986756
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AA seq
769 aa
AA seq
DB search
MPKPPKLPQGFPTPAQVLDFIQSSSIPAGKREIAKAFGLKGQEKIKLKALLKDMAEEGLI
DGSKSAFHRMGGVPKVTTLRIVDVDDGDLIAEPDNWDPEAPGKPPRLTIREPRPKPGVKR
PPALKRGDRVLARTEETETGWRAHVMKKLPARTEGLMGIVEIDKTGKAWLAPVDKRVRQS
TPIADRGEAEAGQLVIAERVGRSERAGVKVVEVIGDPLAPRSFSMIAIAKHGIPHIFPEE
VLDEAPRAAKLKLSDKAREDLRHLPIVAIDPADARDHDDAIWAEPDGQGGFNALVAIADV
SFYVRPGSALDREARKRGNSVYFPDRVVPMLPEVLSADVCSLKEGEDRAAMACHLHINAD
GKVSSFRFTRALVRIAHNIAYEDAQKAVDAGNPPEYLANLWAAWKALAAARDARDPLELE
LPERRVVLDEQGRIASIAIRERLDAHRVVEDFMIAANVAAAKALEAKTAPVVYRIHEPPS
REKLIALRDYLATMGKKLALGQVVTPGLFNRMLKDISDEAEKALVMEAVLRSQTQAYYGP
ANAGHFGLSLGSYAHFTSPIRRYSDLLVHRALVDAYKLEQPAPPGSIPATSGLSDRDRAS
LQQISDAISQTERRAMEAERDTIDRYVAAWLSGRVGEVFDTRITGVQAFGFFATIVGLGG
DGLVPISTLGGEYFRHDEAAHALIGSDSGTTYASGDRLKLKLAEANPLTGALKFVLPDAD
ARAIEPRGNRPDDRRRGGGGQGTPPKKAGKFMVGKRGRPGNIRHQGRKK
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaacctcccaagctgccgcagggctttccgacgcccgctcaggtgctcgacttc
atccagtcctccagcattcccgccggcaaacgcgagattgccaaggccttcgggctcaag
ggccaggagaagatcaagcttaaggcgctgctcaaggacatggccgaggaagggctgatc
gacggatcgaaaagcgccttccaccgcatgggcggcgtgcccaaggtgacgacgctcagg
atcgtcgatgtcgatgatggcgatctgatcgccgagcccgacaattgggaccccgaggct
ccgggcaagccgccacgcctcaccatccgcgaaccgcgtcccaagcccggcgtgaagcgc
ccgccggccttgaagcgcggcgaccgcgtgctcgcccgcaccgaggagaccgagacgggc
tggcgcgcccatgtcatgaaaaagctccccgcgcgcaccgaagggctgatggggattgtc
gagatcgacaagaccggcaaggcgtggctcgccccggtcgacaagcgcgtgcgccagtcc
accccgattgccgaccgcggcgaggccgaggcaggacagctggtgatcgccgagcgtgtg
gggcgctccgaacgcgcaggcgtgaaggtggtggaagtgatcggcgatcctctcgcccct
cgctctttcagcatgatcgcgattgccaagcacggcatcccgcacatcttccccgaagag
gtgctggacgaagccccccgcgccgccaagctgaagctgtcggacaaggcgcgcgaagac
ctgcgccatctgcccatcgtcgccatcgaccccgccgacgcgcgcgaccatgacgatgcg
atctgggccgagccggacgggcagggcgggttcaacgcgctggtcgcgattgccgacgtg
tcgttctacgtccgccccggctccgcgctcgaccgcgaggcgaggaagcgcggcaattcg
gtctatttccctgaccgggtggtgccgatgctgcctgaggttctgtcggccgatgtgtgc
tccttgaaggagggcgaggatcgcgcggcgatggcctgccatcttcacatcaatgccgat
ggcaaagtcagcagcttccgcttcacccgcgcgctggtgcggatcgcgcacaacatcgcc
tatgaagacgcgcagaaggcggtcgacgctggcaatccgcccgaatacctcgccaacctg
tgggccgcatggaaggcgctcgccgcagcgcgcgatgcccgcgatccgctcgaactcgaa
ctgcccgagcggcgcgtggtgcttgatgagcaaggtcgcatcgcctcgatcgccattcgc
gagcggctcgatgcgcaccgggtggtcgaggatttcatgatcgccgccaatgtcgccgcc
gccaaggcgctcgaggccaagaccgcgccggtggtctatcgcatccacgaaccgccgagc
cgcgagaagctgattgccttgcgcgattatctcgccacgatgggcaagaagctggcgctg
gggcaagtggtgacgccgggcctgttcaaccggatgctcaaggatatctccgacgaggcc
gaaaaggcgctcgtcatggaggcggtgctgcgcagccagacccaggcctattacggccct
gccaatgccgggcatttcggcctcagcctcggctcctacgcccacttcacctcgccgatc
cgccgctattccgacctcttggtgcaccgcgcgctggtcgatgcctacaagctggagcaa
cccgccccgccgggatcgatccccgcgacctcgggcctgtcggatcgcgaccgcgccagc
ttgcagcagatcagcgacgcgatcagccagaccgagcgccgcgcgatggaggccgaacgc
gacaccatcgaccgctatgtcgcagcctggctttcagggcgcgtgggcgaggtgttcgac
acgcgcattaccggcgtgcaggccttcggcttctttgccaccattgttggcctcggcggg
gatgggctggtgccgatctcgacgctggggggtgagtatttccgccatgacgaagccgcc
cacgcgcttatcggcagcgacagcgggacgacctacgccagcggtgatcggctgaagctc
aagctggccgaggccaatccgctgaccggggcattgaagttcgttctgcccgatgccgat
gctcgcgccatcgaaccgcgcggcaaccgtcccgatgaccgcaggcgcggtgggggcggt
caaggcactccgccgaaaaaggcaggaaagttcatggtcggcaagcgcgggcggcccggc
aacatccgccatcaaggccgcaagaagtaa
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