Erythrobacter aureus: DVR09_08770
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Entry
DVR09_08770 CDS
T05587
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
err
Erythrobacter aureus
Pathway
err03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
err00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DVR09_08770 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
err03400
]
DVR09_08770 (mfd)
Enzymes [BR:
err01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DVR09_08770 (mfd)
DNA repair and recombination proteins [BR:
err03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DVR09_08770 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
Cas3-like_C_2
MFD_D3
SecA_DEAD
AAA_30
UB2H
RecG_dom3_C
AAA_16
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AXK42411
UniProt:
A0A345YEQ9
LinkDB
All DBs
Position
complement(1788179..1791670)
Genome browser
AA seq
1163 aa
AA seq
DB search
MPDLSRILKADTPLTLAQVARGAQPLVMADLARASSGRAVFIAPDDAAMRGIVDAAAFFA
PELEVIEFPAWDSLPYDRASPALAISARRLAALFRLQAGKAKAQLVVTTANAVLQRALTP
FRIRESVREFKPGIEIGRESLSLLLQKQGYSRTDTVIDKGEYAVRGSIVDIFPSGMDEAL
RLDFFGDELESLRTFDPNTQMSTGRLDSHLLLPASEALLDEDSIKRFRGRYREMFGAHAT
QDPLYEAVSEGRRLAGMEHWLPLFEEKLTTLFDHLGKDDLVVIDQASLAAADERVRDVAD
YYEQRTAITGQTKGNYRPLEPDALYLTGGEFKQALASTPAHRATPFDEPESDSVVSFGFR
SGRDFAPERARGDNVYPVLAEHLKTLSKTGKRPLLAAYSMGSRSRIASILEEAGTPVQLA
DTWQEALGLSAKGKPAAMVLPIEASFANDEMELLTEQDILGDRLVRRKKKRKDADAFLAE
LQALSVGDLIVHTEHGIGKYLGLEPIPVGKSKHDCVQLEYKGGDKLFIPVENIDVLSRYG
SSEEAVMLDRLGGEAWQKRRARLKERIREIAGELMQVAAQRALKKAPVLEVEDGAYNQFL
DRFPWEETDDQERAIEDVLRDLESGKPMDRLVCGDVGFGKTEVALRAAFVAAMNGQQVAV
VAPTTLLARQHYENFANRFRGFPLKVGRLSRLVPAKEMKETREGLADGQVDIVIGTHAIL
SKQTKFKNLGLVIVDEEQRFGVTHKEKLKQLRADVHMLTLTATPIPRTLQMAMTGLRELS
TIQTPPVDRLAVRTYVMEWDDMVMREALLREHHRGGQSFIVVPRISDMEAIADWLHEHVP
EVKFVSAHGQMSAGEIEERMSAFYEGKYEVLLATTIVESGLDLPSANTIIIHRADIFGLA
QLYQLRGRVGRAKLRAYAYLTYASDTQLSEVAEKRLKVLGDLDSLGAGFQLASHDLDIRG
AGNLLGDEQSGHIREVGFELYQSMLEDAILAAKAGELGLEAKPEKISPQITVDAPIMIPE
DYVPDLAVRMALYRRLNDAGDKAEIEVLAAEMIDRFGDLPPATANLVKLIEIKHQAIEAN
IAKIDVGAQGTLVTFHNDDFPDGPGLIAYVDRLQGTAKLRPDMKLVISRAWNSPESRLNG
LFQLTKGLSGIARKARKRDRKAV
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgcccgacctttcccgtatcctgaaagccgatacgcccctcactctggcgcaggtcgcg
cgcggcgcacagccgctcgtgatggccgaccttgcccgagccagttcaggtcgcgcggtg
ttcatcgcgcccgacgatgcggcgatgcgcgggatcgtcgatgcagcggcctttttcgct
cccgaactggaagtgatcgaattccccgcatgggattcgctaccctatgaccgcgccagc
cccgccctcgccatcagcgcgcgacggctggctgcgctattccggcttcaggctggcaag
gccaaggcacagctcgttgtcactacggccaacgccgtactccagcgcgcgctcacaccg
tttcgcattcgcgagagcgtgcgcgagttcaagccgggcatcgagatcgggcgcgaaagc
ctatcgctgctgctgcagaaacagggctacagccggaccgacacggtgatcgacaagggc
gaatatgccgtacgcggttcgatcgtcgacatttttccgagcggcatggacgaggcgctg
cggctcgatttcttcggcgacgagctggaatccctgcgcaccttcgatcccaatacgcag
atgagcaccgggcggctcgactcgcatctgctcctgcccgccagcgaggcgttgctggac
gaggacagcatcaagcgcttccgtggccgctatcgtgagatgttcggggcgcatgcaacg
caggacccgctttacgaagcggtcagcgaaggtcgccgccttgccgggatggagcactgg
ctgcccctgttcgaggagaagttgacgacgcttttcgatcacttgggcaaggacgacctc
gtcgtgatcgaccaggcgtcgttggcggccgccgacgagcgtgtaagagacgtggccgac
tattacgagcagcgcacggccatcaccgggcagaccaagggcaattaccgccctctcgaa
cccgatgcgctctacctgacgggcggggagttcaagcaggctctcgccagcacgcctgcc
caccgcgccacgcccttcgatgaacccgaaagcgatagcgtcgtgtccttcggcttccgc
tcgggccgcgatttcgcgcccgaacgcgcgcgcggcgacaatgtctatccggtgctggcc
gagcatctgaagacgctttcgaaaacgggcaaacggccattgctggcggcctattcgatg
ggcagccgctcgcgcatcgcctcgattctcgaggaagcgggtacgccggtgcagctcgcc
gacacctggcaggaggcgctgggcctgtcggccaagggcaaaccggccgcgatggtgctg
ccgatcgaggccagcttcgcgaacgacgagatggagctgctgacagagcaggacattctc
ggcgaccggctcgtccgccgcaaaaagaaacgcaaggatgcagacgccttccttgccgaa
ttgcaggccctcagcgtcggcgatctcatcgtccataccgaacacgggatcggcaagtat
ctcggcctcgaaccgatcccggtgggcaagtcgaagcacgattgcgtccagctcgaatac
aagggcggcgacaagctgttcattccggtcgaaaacatcgacgttctcagccgctatggt
tcatccgaagaagcagtcatgctcgaccggctgggcggcgaggcctggcagaagcgccgc
gcacgcctgaaagagcgcatccgcgaaatcgcgggcgagctgatgcaggtcgcagcccag
cgcgcgctcaagaaagcaccggtgctggaagtggaggatggggcgtacaaccagttcctc
gaccgtttcccgtgggaggaaaccgacgatcaggaacgcgcgatcgaggacgtgctgcgc
gacctcgaaagcggcaagccgatggatcgcctcgtctgcggcgatgttggcttcggcaag
accgaagtcgcgctacgcgccgctttcgtcgcggcgatgaacggacagcaggtcgcggtg
gtcgcccccaccactcttctcgcgcgccagcattacgagaattttgcgaatcgtttccgt
ggctttccgctcaaagttggcaggttgtctaggctcgtcccggccaaggaaatgaaggaa
acgcgcgaaggtcttgccgatggccaggtcgacatcgtgatcggcacgcacgctatcctt
tcgaagcaaaccaagttcaagaatctcggcctggtgatagtcgacgaggaacagcgcttc
ggggtcacacataaggaaaagttgaaacagctccgcgcggacgtgcacatgctcacgctt
accgccacgccgatcccgcgcacgctgcaaatggcgatgaccggtctgcgcgaactgtcc
accatccagaccccgccggtcgatcgcctggcggtgcgtacctatgtcatggagtgggac
gacatggtcatgcgggaggcattgctgcgcgaacaccatcgcggcggacagagcttcatc
gtcgtgccgcgcatctccgacatggaagccatcgccgactggctgcatgaacatgtgccc
gaggtaaaattcgtctccgctcacggccagatgagcgcgggcgagatcgaagagcggatg
agcgccttctacgagggcaaatacgaagttctcctcgccaccaccatcgttgagagcggg
ctcgacctgccgagcgccaatacgatcatcattcaccgcgccgacattttcggcctcgcc
cagctctaccaattgcgcgggcgcgtcggtcgcgcgaaactgcgcgcctatgcctacctg
acctacgcctccgatacgcagttgtccgaagtggcggagaagcgcctgaaggtgctgggc
gatctcgacagcctcggcgcgggcttccagctcgctagccacgatctcgacattcgcggg
gccggcaatctgctcggcgacgaacaatcgggccatatccgcgaggtcgggtttgaactc
taccagtccatgctcgaggatgcgatccttgccgcgaaggccggtgagctgggtttggaa
gccaagcccgagaaaatcagtccgcagatcacggtcgatgccccgatcatgatccccgag
gattacgtgcccgacctggcagtacgcatggccctgtaccgccgcctcaacgatgccgga
gacaaggccgagatcgaggtgctcgccgccgaaatgatcgaccgtttcggcgacttgccg
cccgcgacggcaaatttggtcaagctgatcgaaatcaagcaccaggcgatcgaagccaat
atcgccaaaatcgatgtcggcgcgcagggcacgctggttacgtttcacaatgacgacttc
cccgatgggccgggcttgatcgcctatgtcgaccggcttcagggcaccgccaagctgcgc
cccgacatgaagctagtcatcagccgcgcgtggaattcgcccgaaagcaggctcaatggt
ctgttccagctcaccaagggactatcgggtatcgcaaggaaagcgagaaagcgcgacagg
aaagcagtttaa
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