Erythrobacter aureus: DVR09_12060
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Entry
DVR09_12060 CDS
T05587
Name
(GenBank) ATP-dependent helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
err
Erythrobacter aureus
Pathway
err03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
err00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DVR09_12060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
err03019
]
DVR09_12060
Enzymes [BR:
err01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DVR09_12060
Messenger RNA biogenesis [BR:
err03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DVR09_12060
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
ERCC3_RAD25_C
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AXK42960
UniProt:
A0A345YGA8
LinkDB
All DBs
Position
complement(2458994..2460364)
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AA seq
456 aa
AA seq
DB search
MTQFSDLGLSQPVLQALDLKGYNEPTPIQAQAIPPVLEGRDLMGIAQTGTGKTAAFMLPS
IDRLREADRQTPFKSCRMLVLAPTRELAGQIAQSAKDYGALAGLKVHSIVGGTSVNKDRN
KLHRGTDILVATPGRLLDLIDQKAFTLDKVEVLVLDEADQMLDLGFIHALRRISQLVPED
RQTLFFSATMPKQIQELVGKYCRNPVKVSVTPESTTAERIDQFLFMVQQDEKQTLLEMIL
SERHQVPGKFERVLIFARTKHGCDRIVKKLSQVGIPANAIHGNKSQPQRERALDEFKRAK
TPILIATDVAARGIDIPGVSHVINYELPNVPEQYVHRIGRTARAGKDGIAIAFCAEDERD
YLKDIRKKTDAEFERLPLPDNFRAVVEGVGPTKRAAPGQRMAKPKVRPTGDAAARRSKPK
NKHPNRAGAPKRDGAPGGKPGGGRPSRNRNRRRAGR
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgactcagttttccgacctcgggctatcgcagcccgtcctccaggccctcgacctcaag
ggctacaatgaacccacgccgatccaggcgcaggcgatcccgcccgtgctcgaaggccgc
gatctcatggggatcgcccagaccggcaccggcaagaccgccgccttcatgctgcccagt
atcgaccggctgcgcgaagccgacaggcagacgccgtttaagtcctgccgcatgctggtg
cttgcaccgacgcgcgaactggcaggccagatcgcccagagcgccaaggattacggcgcg
cttgcgggccttaaggtgcacagcatcgtcggcggcacctcggtcaataaggaccgcaac
aagctgcatcgcggaaccgatatcctcgtggccacgccgggccgcctgctcgacctgatc
gaccagaaggccttcaccctcgacaaggtcgaagtgctggtgctcgacgaggccgaccag
atgcttgacctcggcttcatccacgcgctgcgccgcattagccagctcgtgcccgaagac
cgccaaacgctgttcttcagcgccaccatgcccaagcagatccaggaactggtcggcaaa
tattgccgcaatccggtcaaggtctcggtgacgcccgaaagcaccacggccgagcggatc
gaccagttcctcttcatggtccagcaggacgaaaaacagacgctgctcgaaatgatcctg
tccgaacgccaccaggtgcccggcaagttcgagcgcgtgctgatcttcgcgcggaccaag
cacggctgcgaccggatcgtgaagaagctgtcgcaggtcggcatcccggccaatgccatc
catggcaacaagagccagccgcagcgcgaacgcgcgctcgacgaattcaagcgcgccaag
accccgatcctcatcgcgaccgatgtggccgcgcgcgggatcgacattccgggcgtcagc
catgtgatcaattacgaactgcccaatgtgccggaacaatatgtccaccgcatcgggcgc
acggcgcgcgcgggcaaggacggcatcgccattgccttttgtgccgaggacgagcgcgac
tatttgaaggacattcgcaagaagaccgacgccgaattcgagcgcctgccgctgccggac
aatttccgcgcagttgttgaaggtgtcgggccgaccaagcgcgcggctcccggccagcgc
atggccaaacccaaggttcgccccaccggcgatgccgcggcgcgccggtccaagcccaag
aacaagcaccccaaccgcgccggcgcgcccaagcgcgacggtgcacccggtggcaagccg
ggcggcggtcgtccttcgcgcaatcgcaaccgacgccgcgcggggcgttaa
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