Agathobacter rectalis DSM 17629: EUR_22290
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Entry
EUR_22290 CDS
T02587
Name
(GenBank) Superfamily I DNA and RNA helicases
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ert
Agathobacter rectalis DSM 17629
Pathway
ert03420
Nucleotide excision repair
ert03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ert00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EUR_22290
03430 Mismatch repair
EUR_22290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ert03400
]
EUR_22290
Enzymes [BR:
ert01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EUR_22290
DNA repair and recombination proteins [BR:
ert03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EUR_22290
MMR (mismatch excision repair)
Other MMR factors
EUR_22290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD_C
UvrD_C_2
AAA_19
UvrD-helicase
Viral_helicase1
DEAD
CYP38_PsbQ-like
SLFN-g3_helicase
AAA_30
Gal_mutarotas_2
NACHT
Motif
Other DBs
NCBI-ProteinID:
CBK91233
LinkDB
All DBs
Position
2289711..2292842
Genome browser
AA seq
1043 aa
AA seq
DB search
MGTENDLLGISLKDEQRQLQNIIGIAQDNLDRAKESVKKLTDDLEDLRDVYEAQDKEGLA
LWNNATAQLHENERNIVRCEKARKKPYFGRIDFKDPRQKSQESYYIGRVGIAKNASEPVV
IDWRAPIASVYYESSLGPCKYTVSSEGTFEIDLNRKRTYEIADDKLIDFFDSDVVANDEL
LTKYLAKNKKAVLGEIIATIQKEQNLIIRRSPKTNIIVQGVAGSGKTTVAMHRISYILYN
YADDFRPEDFYIIGSNHILLNYITSVLPELDVYGIKQMTMEQLFTRLLYEDWDDKKYSIH
EVSKNDSRNSIKGSKEWFEALEKFCLDYEEKCIPRDEVYMEKTGNLLVGKVLIDTYLHDN
PLLSMQSKILMLNEIIYSKYENEVLGKEVKFPAKERRELDKKYKTYFGKDDWKGSVYDFY
RDFLHSQKEYDIAIPKDSFDVYDLAALAYIYKRIKETDPVREASHVVIDEAQDFGMMAYC
CLHYCLRNCTYTIMGDTSQNIHFEYGLNDWEDLKKLILTGTYDAFGLLRKSYRNTVEISE
FATEILRHGDFAIYPVEPIIRHGNAVRIEEYANVRSLISASVDTIKGWQSEGYETIAVVC
RDEAEALKVSAELKKHIEIADDDIETAQFGAGVMVLPVAYTKGLEFDAVLLFDPSERKYP
ADDSHVKLLYVAATRALHELAVFHRGRLTPLIADPAPSNRHQKEFSAEPLTKAKEYEKQQ
LTEKEIEEQKRVDGRRDMDEREYFGPSRIALKPEQVTNKAENEKLDLSAFVKKDRENQTQ
CTATDMANKIKIKEVSKAAKKSSLPLNPSPYAYGSIPDNDILRVKGHSKGKFAVKWLKKG
KSHVEIATADGTLYVIPITPEIVRVIFVKGIGVKPHKTYWKQKADTAFKWVAKESKSLIE
IQTEKLILRIEKKNGAIQYFDADKNLLVSENATEPRLLNNGECYTFFDWDKSEKLKSKGI
LATDLTDLTNKARYISFGGRQQRLPLVVSNKGYGIAPASSRTALFCNIKMYGQYIFIDCD
TQSDYYFICGGSVGYTLELYGTL
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atgggcacagaaaatgatttactgggaatttcattaaaagacgagcagagacagcttcaa
aatatcatagggattgcacaggataatctggaccgtgcaaaggaatcggtaaaaaagctg
acagatgatttagaggatttaagagatgtctacgaggcgcaggacaaggagggacttgcc
ctgtggaacaatgcgacagcgcagcttcatgagaacgagagaaatattgtaagatgtgaa
aaggcgcggaaaaagccgtattttggcagaatagattttaaggatccgcgtcagaagtca
caggagtcctactatataggcagagttggtattgcgaagaatgcatcagagcctgtggtc
attgactggagagcaccgattgcatccgtatattatgagagcagtcttggaccatgtaag
tacacggtgagctcagagggtacttttgagattgatttaaacagaaagcgcacctatgag
attgcagatgataagctcatcgacttttttgattcagatgtcgtagcaaatgatgagctt
ctgacaaagtacctggctaagaataaaaaggcagtgctcggagagattattgcgacaatc
caaaaggagcaaaaccttattatccgccgttcgccaaagacgaatatcattgtgcaggga
gttgcaggctcaggaaagacaacggttgcaatgcacaggatatcgtacattttatataat
tatgctgatgatttcagaccggaggatttctacattataggcagtaaccacattttgttg
aactatattacaagtgtgcttccggagcttgatgtgtacggcataaaacagatgactatg
gagcagctttttacaaggcttttgtacgaggattgggatgacaaaaagtacagcatacat
gaagtcagcaaaaatgacagtagaaacagcataaagggcagtaaagaatggtttgaagct
cttgaaaaattctgtttagattacgaggaaaagtgtattccgagagatgaggtctacatg
gaaaaaacaggcaatctgcttgtgggaaaggtgctgatagacacttatctgcatgataat
ccgcttctttccatgcagagtaaaatcctcatgttaaatgagataatttactcgaagtat
gaaaatgaggttctcggtaaggaagtgaagttccctgcaaaggagcgcagggagcttgat
aaaaaatacaaaacctatttcggtaaggatgactggaaaggctctgtgtatgatttttac
agggattttctgcatagtcagaaggaatatgatatagctattccaaaggactcatttgat
gtgtatgatctggcagcgcttgcgtatatttataagcgcatcaaggagacagatccggtt
cgtgaggcgagtcatgtggttattgatgaggcacaggattttggcatgatggcatactgc
tgtctgcattactgcctcagaaactgcacatacactatcatgggcgatacctcgcagaat
atacattttgagtatggcttaaatgactgggaggacttgaaaaagctgatactcacaggc
acatatgatgcattcggtctgcttcgaaagagctacagaaacactgttgagatttcagaa
tttgcaacagagatactgcgccatggagattttgcaatctatccggtggagcctattatt
aggcatggaaacgcagtgcgcatagaggagtatgccaatgtgcgctcactgatttcggca
tcggttgacacgataaaaggctggcagagtgaaggctatgagacgatagctgtcgtgtgc
cgtgatgaagcagaggctctcaaggtgtctgctgagcttaaaaaacatatagaaatagca
gatgatgatattgaaacggcacagtttggtgcaggagtcatggtacttccggtcgcgtat
acaaagggacttgagtttgatgctgtattgctgtttgacccatcagagagaaaatatccg
gctgatgatagtcatgtgaagcttttgtacgttgcggctacccgtgcacttcatgagctt
gctgtattccaccggggcaggctgacaccgcttattgcagaccctgctccttccaacagg
catcagaaggagttttctgcagagccgctcactaaggcaaaggaatatgaaaagcagcaa
ctgacagaaaaagagatagaagagcaaaagcgtgttgatggcagacgcgatatggatgaa
agagagtattttggtccgtcgcgcattgcattaaaacctgagcaggtgacaaataaggct
gaaaatgagaagcttgatttatctgcatttgtaaaaaaagacagggaaaatcaaacacaa
tgtactgctacagatatggcaaataaaattaagattaaggaagtaagtaaggctgcaaaa
aagagcagcctccctctcaatccctccccatacgcatacggctcaatcccggacaacgat
atacttcgtgtaaagggacattcaaagggcaagtttgcggtaaaatggctcaaaaaaggt
aaatcgcatgttgaaatcgccacagcggacggcacactttatgtgataccaataacaccg
gagatagtacgcgtaatctttgtaaaaggaattggagtgaagccgcacaaaacctattgg
aagcaaaaggccgatacagccttcaaatgggtggcaaaagaatccaaatcgcttattgaa
attcaaacggagaagctgatactaaggatagaaaagaaaaacggagccatacagtatttt
gatgccgacaaaaatctccttgtaagtgaaaatgccacagagccaaggcttttaaataat
ggcgagtgctacacattttttgactgggacaaatcggaaaagctcaaatccaagggaata
cttgcgacagaccttactgatttgacaaacaaagccagatatatttcgttcggaggcaga
cagcagaggctgccgcttgtcgtgtcaaacaagggctatggaatcgcaccagcatcaagt
cgcacagcactgttttgcaatataaagatgtatgggcagtatatctttatagactgtgac
actcaaagcgactattactttatatgcggaggcagtgtggggtatactcttgagctgtac
ggcacgttataa
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