Agathobacter rectalis DSM 17629: EUR_31630
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Entry
EUR_31630 CDS
T02587
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ert
Agathobacter rectalis DSM 17629
Pathway
ert03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ert00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EUR_31630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ert03019
]
EUR_31630
03400 DNA repair and recombination proteins [BR:
ert03400
]
EUR_31630
Enzymes [BR:
ert01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EUR_31630
Messenger RNA biogenesis [BR:
ert03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EUR_31630
DNA repair and recombination proteins [BR:
ert03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
EUR_31630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
DUF6293_C
Motif
Other DBs
NCBI-ProteinID:
CBK92071
LinkDB
All DBs
Position
3241938..3243917
Genome browser
AA seq
659 aa
AA seq
DB search
MNINQTLKQYFGYDSLRTGQEELINGILAGHDVLGIMPTGAGKSLCYQLPALMLKGITLV
ISPLISLMSDQVKALNQAGVHAAYINSSLTENQIRMALSYASQGRYKIIYVAPERLNTPR
FLDFACNADISMLTVDEAHCISQWGQDFRPSYLEIAGFLTRLPRRPIVSAFTATATERVK
NDIVASLGLNNPVTMVTGFDRPNLFFRVVTRKGGSQKDNSIINYVKKHEDESGIIYCATK
KNVDKLYTLLNEQGISAGRYHAGLSNDERKQNQEDFTYDRIRVMVATNAFGMGIDKSNVR
YVLHYNMPQSLEYYYQEAGRAGRDGEEAECVLFFSKQDIMINKFLLQNKASAGDVASDMQ
KTANDQRKLQQMINYCETDKCLREFILSYFGDTTPCICNKCSNCVVVEDEEEETYVETGK
KRKKAAQLAGLNELGAALFEKLRSVRTELAAEKSVPPYIICSDKTLKDMCAKLPRDKEQL
ADVYGMGEQKIQNYGEAFVTAVNSFVADNPNPSGSTTGERPQTVLSDEEAAENGSTRKKK
LPFYIEPQRLDEVELTDKCRLTELTNKINELCHADKEHKKLAASFINELLIAEGYLEEVT
EGENKIKRVTEKGRSVGIDEEERKAKFGGSYYAITHSKQSQQVIIEMLKKHHSGIKPQE
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgaacataaaccagacactcaaacaatactttggctacgacagtcttagaacagggcag
gaggagctcataaacggcatacttgcagggcacgatgtgctcggtatcatgccgacaggc
gcaggaaaatcgctgtgctaccagcttccggcgcttatgcttaaaggaattacgcttgtc
atttcgccacttatctcgcttatgtcagatcaggtcaaggctttaaaccaggcaggagtg
catgccgcctatatcaacagctcactgaccgaaaaccagataaggatggcactttcgtat
gcctcacaggggcgatacaagataatctatgtcgctccggagcgcctcaacacgccgcgt
tttctggattttgcctgcaacgcggacatatcaatgctgacagttgatgaggcacactgt
atatcgcagtggggacaggatttcagaccgagctatctggaaattgccggatttttaacg
agacttccaagacgaccgatagtcagtgcgtttacagcgaccgccacggagcgcgtgaaa
aatgatatagtggcttcgcttggacttaacaatccggtcactatggtgacagggtttgac
agacctaacctgtttttcagggttgttacaagaaagggaggcagccagaaggacaacagt
atcatcaattatgtgaaaaagcatgaggacgaaagtggaataatatactgcgcaacgaaa
aagaatgtggataagctgtatactcttttaaatgagcagggcatttcggcgggacgttac
cacgcagggctttcaaatgatgaacgtaagcagaatcaggaggattttacatacgacaga
atccgtgtgatggttgccacaaacgcatttggaatgggaattgacaagtcaaatgtgaga
tatgtgctgcattacaacatgccacagagcctcgagtattactatcaggaggccggaaga
gcgggacgagacggtgaggaagcggaatgtgtgctgtttttctcaaagcaggatatcatg
ataaacaagttccttctgcaaaataaggcttcagcaggcgatgtggcatccgacatgcaa
aagacagccaatgaccaaagaaagctgcagcagatgataaattactgcgagacggacaaa
tgcctgagagagtttatactttcatatttcggagacacaaccccctgcatctgcaacaaa
tgcagcaactgtgtggttgtggaggatgaagaggaggagacatacgttgaaaccggcaaa
aagcgcaaaaaggcagcacagcttgcggggcttaacgagcttggtgctgcactgtttgaa
aagctgcgcagcgtgcgtacagagctagctgcagaaaagtcggtgcctccgtatatcatc
tgctccgacaagactttaaaggatatgtgcgcaaagctgccgcgggataaggaacagctt
gccgatgtgtacggaatgggtgagcagaagatacaaaattatggtgaagcgtttgtgacg
gcggtaaattcatttgttgcagataacccaaatccatcaggcagcacgaccggcgaaaga
ccacagactgttttaagcgatgaggaggctgctgaaaacggcagcacgagaaaaaagaag
cttccgttttacatcgagccgcagaggcttgatgaggtagagctaaccgacaaatgcagg
cttacagagcttacaaacaaaataaatgagctgtgtcatgcggataaggagcacaaaaag
cttgcagcctcgtttataaatgagcttctcattgcagagggatatctggaggaagttaca
gaaggcgagaacaagataaagcgtgtcaccgaaaagggaagaagcgtaggaatagatgag
gaagagcgcaaggcaaaatttggtggaagctattacgctatcacccattcgaagcagagc
caacaggtgataatagaaatgctgaaaaaacaccatagcggaattaaaccacaggagtaa
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