Ehrlichia ruminantium Welgevonden (South Africa): Erum7290
Help
Entry
Erum7290 CDS
T00224
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
eru
Ehrlichia ruminantium Welgevonden (South Africa)
Pathway
eru03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
eru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Erum7290 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
eru03400
]
Erum7290 (mfd)
Enzymes [BR:
eru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Erum7290 (mfd)
DNA repair and recombination proteins [BR:
eru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Erum7290 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
UvrB_inter
MFD_D3
Cas3-like_C_2
RecG_dom3_C
AAA_19
Motif
Other DBs
NCBI-ProteinID:
CAH58461
UniProt:
A0A0H3M001
LinkDB
All DBs
Position
1244758..1248126
Genome browser
AA seq
1122 aa
AA seq
DB search
MNTVNYISNIPHTLEAFAIAEMYNKGLINSAIYITNQEDSLYQLSSIFQFYIPNLKVIVV
PAWNLIPYKKNSPNNLIMAERIKSLYSLTHTHNNTTTPYIIITTTNAVIQKVLPRNIISQ
IVFKITVQENLPIHYIKNYLITHGYTQYSTVQDIGEFCVNNTTIDIFPITYQNPIRIYLN
NDHVESIKTFDCKTQLIHTDSSINEIFIYPTSEVIKQQQNIEQFLKIYKTKANQDKHLLN
TIVSKKKYIGEENFLPLFYEEELEDIFNYIQDIQLIFSNKIIDQISQYNNNLRSNYKNSL
YYQIAPDQLYITLENFYSITKQLKKIIFLTVDELNYVNIDIQNPQCNVTKIKKIPNFKAL
AVQEQTDVFEIFAQYIKSQHHAYKLLIACHSVETLEYIQSKLAICQIKLNKINNYNEINN
TYNIAILQINNSFSTESTIIVTENDLLSTTSTTSISDIINYTIDLNIGDIVIHKDYGIGK
IAKLETIKVLDNYHDFLKIEYYNNDKLFLPVENINLITRYSNQDSNITLDRLGSTSWQQR
QTKLKNHIQKIAKELIRIEAARQLMQGTPFLPNNTYKNFCDEFAYTETTDQLQAIQDIEN
DLSGGKIMNRLICGDAGFGKTEVALRAAFLVAIKNYQVAVIVPTTLLCKQHFAVFTERFK
NFPNIKIQQLSKIVNKHEIKKIKENISYGHTHIIIGTHAILSQDVNFFNLSLVIIDEEQQ
FGVKQKELLKKIKANVHVLSLSATPIPRTLHMSLCGIKNFSLIKTPPKNRLPVITYTIHY
TDNTIKNAIIHEYERGGRTFYVCPQINNIKNINDNLIRLLPDIKIGIAHGQLPSHELENV
MNDFLDGKFTVLLTTSIIECGLDIPHANTIIIHNADMFGLAQLYQLKGRVGRSNIKGYAY
FILSDNINNISERRLEIIRSIDSINSGFALSLHDMDIRGFGNLIGEEQSGNIKDIGIELY
QQMLEEELNTNNQCYKNLHHININININIRIPEHYISDIGLRMNMYKRIGNLRTKEEIDS
FHIALIKKFGKLPDEVENLLDIIYIKQLCIPIGIYEIEQVKNIVNFKIHNNVTFPKMVLD
YLIHNPLILKIQNNSISMLVNNISSRITKLIIHHLKKITSLL
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgaacaccgttaattatatctctaatataccacatacacttgaagcatttgctatagca
gaaatgtacaacaaaggactgattaactctgcaatatatataacaaatcaagaagattct
ttatatcaattatcatctatttttcaattctacattccaaaccttaaagtaattgtagtc
cccgcatggaacttaataccatataaaaaaaattcacctaacaatctaataatggcagaa
cgaataaaaagcttatactctttaactcatacacataataatactactactccatatatc
atcataacaacaactaatgcagtcatccagaaagtactgcccaggaacataatatcacaa
atagtatttaaaattacagtacaagaaaatcttcctatacactacattaaaaactatctt
ataactcatggatatactcaatactcaacagtacaagatattggtgaattctgtgtcaat
aacaccactatagacatatttcccataacatatcaaaatcctataagaatttacttaaat
aatgatcacgtagaatcaattaaaacatttgattgcaaaacacaattaatacatacagat
tcttctataaatgaaatattcatttacccaacttctgaagtaataaagcaacaacaaaat
atagaacagttccttaaaatttataaaacaaaggctaatcaggacaaacacttgttaaac
acaatagtctccaaaaaaaaatatataggagaagaaaatttcttacctttattttatgaa
gaagaattagaagatattttcaattatattcaagatatacagttaatatttagtaacaaa
ataattgatcaaatatcacaatataataacaacctaagatcaaattataaaaattcactg
tattatcaaatagctccagatcaattatatataactcttgaaaacttttactctattact
aaacaattaaaaaaaattattttcttaacagtagatgaactaaattatgttaacattgac
atacaaaacccacaatgcaacgttacaaaaatcaagaaaatacctaattttaaagcatta
gcagtacaagaacaaaccgatgtatttgaaatctttgcacaatacattaaaagtcagcat
cacgcatataagctattaatagcatgtcactctgtagaaaccttagaatatatacaaagc
aaacttgcaatatgtcagataaaactaaataaaataaataactataatgagatcaataac
acgtataacatagctatattacaaataaataacagtttctctaccgaatccacaataata
gtaacagaaaatgatttactgagcacaacgtctacaacaagtatatcagacattatcaat
tatactatcgatttaaatataggtgacatcgtaatacacaaagactatggcatcggcaaa
atagcaaaacttgaaactattaaagtattagataactatcacgatttcttaaaaatagaa
tactacaacaacgataagctatttttacctgtagaaaacattaatttgataactaggtat
agtaatcaagatagtaatattacactagataggctaggaagcacatcatggcagcaacgc
caaactaaattaaaaaaccatatacaaaaaattgcaaaagaactaattagaatagaagca
gcaagacaattaatgcagggcacaccttttctacctaacaatacttataaaaatttctgt
gatgaatttgcttatactgaaacaacagatcagctacaagctattcaagatatagagaat
gacctgtccggtggaaaaataatgaatcgacttatatgtggagatgcaggatttggaaaa
acagaagtagcattaagagcagcatttttagtagctataaaaaattatcaggttgcagta
atagtaccaactaccttattatgtaaacaacattttgctgtatttactgaaagatttaaa
aacttcccaaatataaaaattcaacaattatctaaaattgtgaataaacatgaaataaaa
aaaataaaagaaaacatatcatatggacacacacatattattataggaacacatgctata
ttatcacaagacgtaaatttctttaacttaagcctagtcattatagatgaagaacaacaa
tttggagttaaacaaaaagagttgctaaagaaaattaaagcaaatgtccatgtactgtca
ctatctgcaacaccaataccaagaacattacacatgtccctatgtggtataaagaatttc
agtttaataaaaacaccaccaaaaaacagattaccagttataacatatacaattcattac
accgacaacacgatcaaaaatgctataattcatgaatacgaaagaggtggaagaacattt
tatgtatgtccacaaattaacaacataaaaaatattaatgacaatttaattagattatta
ccagatatcaaaataggaattgcccatggtcaattgccttcccacgaacttgaaaatgtt
atgaatgatttccttgatggtaaatttacagtattacttacaacatcaatcatagaatgc
ggcttagatattccacatgctaacacaattataatacacaatgctgacatgtttggactt
gcacagctctatcaattaaaaggtagagtaggacgtagtaatattaaaggttatgcatat
tttatactatcggataacataaacaatatatcagagcgaagactagagatcatacgatca
atagattccataaactcaggatttgcgttatcacttcatgatatggatatcagaggattt
ggtaatttaattggagaagaacaatcaggaaatataaaagacataggtattgagttatat
caacaaatgttagaagaagagttaaatactaataatcaatgttataaaaatcttcaccat
ataaatatcaatattaatataaatattagaattccagaacattacattagtgacatagga
ttaagaatgaacatgtataaaagaataggtaatctaagaacaaaagaagagatagatagt
tttcatatagcacttattaaaaaatttggcaaattaccagatgaagtggagaatttatta
gatatcatatatataaaacagttatgtatacccattggcatttacgaaattgaacaagta
aaaaatattgtaaattttaaaatacacaataatgtaacttttccaaaaatggtattagat
tatttaatacacaatccattaattttaaagatacaaaacaacagcatttcaatgttagtt
aataatatctcatcacgtattacaaaactcataatacatcatctaaaaaaaataacatca
ctgctataa
DBGET
integrated database retrieval system
