Eulemur rufifrons (Bennett's brown lemur): 138375061
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Entry
138375061 CDS
T11398
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
eruf Eulemur rufifrons (Bennett's brown lemur)
Pathway
eruf03030
DNA replication
eruf03410
Base excision repair
eruf03420
Nucleotide excision repair
eruf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
eruf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
138375061 (LIG1)
03410 Base excision repair
138375061 (LIG1)
03420 Nucleotide excision repair
138375061 (LIG1)
03430 Mismatch repair
138375061 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
eruf03032
]
138375061 (LIG1)
03400 DNA repair and recombination proteins [BR:
eruf03400
]
138375061 (LIG1)
Enzymes [BR:
eruf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
138375061 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
138375061 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
138375061 (LIG1)
DNA replication proteins [BR:
eruf03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
138375061 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
138375061 (LIG1)
DNA repair and recombination proteins [BR:
eruf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
138375061 (LIG1)
NER (nucleotide excision repair)
Other NER factors
138375061 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
138375061 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
DDR
PucR
Motif
Other DBs
NCBI-GeneID:
138375061
NCBI-ProteinID:
XP_069314507
LinkDB
All DBs
Position
24:complement(12152225..12190570)
Genome browser
AA seq
921 aa
AA seq
DB search
MQRSIMSFFHPKKEGKAKKPEKEASNSSRETEPPPKTALKEWNGVVPDNDSPVKRPGRKA
ARVLGSEGEEDDDETLTPPKGKKPAPDCLKVSPPSPAPSPENSPSLSDTSPTSNSPLGIL
KRRTARKQLPKRTIQDVLEEQSEDKVREAKRRKEEEGEAPAEAESPKESLTKAEVATKKE
AEEEDMPMTPPNSLETSKAEKPKESGSEPEVAVKQEAQDETKPLPRAPKTLSSFFTPRKP
TVKKEVKEEGPGTPGKEDSKGPLDPTSYNPAKNNYHPVEDACWKPGQKVPYLAVARTFEK
IEEVSARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNSLGPPQQGLELGVGDGVLLKAV
AQATGRQLESVRAEAAEKGDVGLVAENSRSTQRLMLPPPPLTASGVFAKFLDIARLTGSA
STAKKMDIIKGLFVACRHSEARFIARSLSGRLRLGLAEQSVLAALAQAVSLTPPGQGFPP
AVLDAGKGKTAEARKTWLEEQGMILKQTFCEVPDLDRIVPVLLEHGLERLPEHCRLSPGI
PLKPMLAHPTRGVSEVLKRFEEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGKY
PDIISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQVQVCLY
AFDLIYLNGESLVREPLSRRRQLLRENFMETEGEFVFATSLDTKDIDQIAEFLEQSVKDS
CEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGF
LLASYDKDSEELQAICKLGTGFSDEELEGHHQQLQALVLPAPRPYVRIDGAGAPDHWLDP
STVWEVKCADLSLSPIYPAARGLVDSEKGISLRFPRFIRVREDKQPEEATSSAQVAYLYR
KQSQIQNQQGEDSDSNLEDMY
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagtatcatgtcattcttccaccccaagaaagagggtaaagcgaagaagccc
gagaaggaggcatccaacagcagcagagagacggagccccctccaaaaacagctctgaag
gagtggaatggagtggtgcctgataacgactctccagtgaagaggccggggaggaaggcg
gcccgggtcttgggcagcgaaggggaggaggatgacgacgaaaccctgactccccctaaa
ggaaagaaacctgccccggactgcctgaaagtatcccctcctagccctgccccatctcct
gagaacagcccttccctctctgacacctctcccacgagcaactccccactggggatcctg
aagcgccgcacagctcggaagcagctcccgaaacggacaattcaggatgtcctggaagag
cagagtgaggacaaggtccgagaagccaagaggaggaaggaggaggaaggtgaggcacca
gcagaagcagagagcccaaaagaaagcctgacgaaggctgaagtggcaacaaagaaagaa
gcagaagaggaagacatgcccatgacacctcccaattccctagagacctccaaagcagag
aagccgaaggaaagcggttcagagcccgaggtggccgtgaagcaggaagcacaggacgag
actaagcctctccccagagcccccaagacgctcagcagcttcttcacaccccggaagcca
acagtcaaaaaagaagtgaaagaagagggaccgggcactccagggaaggaggacagcaag
ggacccctggacccaaccagctacaatcctgccaagaacaactaccatcccgtcgaggat
gcctgctggaaaccaggccagaaggtcccttatctggccgtggcccgcacatttgagaag
atcgaggaggtttctgctcggctccggatggtggagaccctgagcaacttgctgcgctcc
gtggtggccctgtcacccccagacctcctccctgtcctctacctcagcctcaatagcctt
gggccaccccagcagggcctggagcttggcgttggtgacggtgtccttctcaaggcagtg
gcccaggccacaggtcggcagctggagtcggtccgggctgaggcagctgagaagggcgac
gtggggctggtggccgagaacagtcgcagcacccagaggctcatgttgccgccaccgcca
ctcactgcctcgggggtcttcgctaagttcctcgacatcgccaggctcacgggcagtgct
tccacagccaagaagatggacatcatcaaaggcctcttcgttgcctgccgccactccgaa
gcccgattcatcgccaggtccctgagcggacggctgcgcctggggctggcagagcagtcg
gtgctggccgccctcgcccaggctgtgagcctcacgcccccaggccaaggattcccccca
gctgtgttggatgctgggaagggcaagacagcagaggccaggaagacgtggctggaggag
cagggcatgatcctgaagcagacgttctgtgaggtgcctgacctggaccgaattgtcccc
gtgctgctggagcatggcctggaacgactcccggagcactgcaggctgagcccaggcatc
cccctgaagccaatgttggcccatcccactcggggtgtcagcgaggtcctgaaacgcttc
gaggaggcagctttcacctgcgagtacaaatacgatgggcagagggcacagatccatgtt
ctggaaggcggggaggtgaagatcttcagcaggaaccaggaagataacaccgggaagtac
ccagacatcatcagccgcatccccaagattaaactcccatctgtcacatccttcatcctg
gacactgaagccgtggcttgggaccgggaaaagaagcagattcagccattccaagtgctc
accactcgcaaacgcaaggaggtggatgcatccgagatccaggtgcaggtgtgtttgtat
gccttcgacctcatctacctcaacggagagtccctggtacgtgagcccctttcccgacgc
cggcagctcctccgggagaacttcatggagacggagggtgagtttgtcttcgctacctcc
ttggacaccaaggacattgaccagatcgccgagtttctggagcagtccgtcaaagactcc
tgcgaggggctgatggtgaagaccctggacgtcgatgccacctatgagatcgccaagaga
tcgcacaactggctcaagctgaaaaaggactacctcgacggcgtgggcgacaccctggac
cttgtggtgatcggcgcctacctgggccgggggaagcgggccggccggtacgggggcttc
ctgctggcctcctacgacaaggacagtgaggagctgcaggcgatatgcaagctcggaact
ggcttcagcgacgaggagctggaggggcatcaccagcagctccaggccctggtgctgccc
gcgccccgcccctacgtgcgcatagatggcgccggggctcccgaccactggctggacccc
agcaccgtgtgggaggtgaagtgcgcagacctctccctctcccccatctaccctgctgcg
cggggcctggtggacagtgagaaagggatctcccttcgcttccctcggtttattcgagtc
cgggaagacaagcagccggaggaggccaccagcagtgcccaggtggcctatctgtaccgg
aagcagagtcagattcagaaccagcagggcgaggactcggactcgaaccttgaagacatg
tactaa
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