Eulemur rufifrons (Bennett's brown lemur): 138395723
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Entry
138395723 CDS
T11398
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
eruf Eulemur rufifrons (Bennett's brown lemur)
Pathway
eruf03013
Nucleocytoplasmic transport
eruf03015
mRNA surveillance pathway
eruf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
eruf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138395723 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
138395723 (DDX39B)
03015 mRNA surveillance pathway
138395723 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eruf03019
]
138395723 (DDX39B)
03041 Spliceosome [BR:
eruf03041
]
138395723 (DDX39B)
Enzymes [BR:
eruf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
138395723 (DDX39B)
Messenger RNA biogenesis [BR:
eruf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
138395723 (DDX39B)
Spliceosome [BR:
eruf03041
]
Complex C
Other components
EJC/TREX
138395723 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
138395723 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
138395723
NCBI-ProteinID:
XP_069344697
LinkDB
All DBs
Position
15:complement(2354307..2365360)
Genome browser
AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaaacgatgtagacaatgagctcttggactatgaagacgatgaggtggagaca
gcagctgggggcgatggggctgaggcccctgccaagaaggatgtcaagggctcctacgtt
tccatccacagttctggctttcgggactttctgctcaagccagagttgctccgggcaatt
gttgactgtggctttgagcatccatcagaagtccagcatgagtgcatccctcaggccatt
ctgggaatggatgtcctgtgccaggccaagtcaggcatgggaaagacagcagtgtttgtg
ctggccacgctgcagcagctggagccggttactgggcaggtgtctgtgctggtgatgtgt
cacactcgggagttggcttttcagataagcaaagaatatgagcgcttctctaaatatatg
cccaatgtcaaggtcgcagtgttttttggtggtctgtctatcaagaaggatgaagaggtg
ctgaagaagaactgcccgcatatcgtcgtggggactcctggccgcatcctagccctggct
cgaaataagagcctcaacctcaaacatattaaacactttattttggatgaatgtgataag
atgcttgaacagctcgacatgcgtcgggatgtccaggaaatttttcgcatgaccccccac
gagaagcaggtcatgatgttcagtgctaccttgagcaaagagatccgtccagtctgccgc
aagttcatgcaagatccaatggagatcttcgtggatgatgagacgaagttgacgctgcat
gggttgcagcagtactacgtgaaactgaaggacaacgagaagaaccggaagctttttgac
cttctggatgtccttgagttcaaccaggtggtgatctttgtgaagtctgtgcagcgatgc
attgccctggcccagctcctggtggagcagaacttcccggccattgccatccaccgtggg
atgccccaggaggagaggctttctcgatatcagcagtttaaagattttcaacgacgaatt
cttgtggctaccaacctgtttggccgaggcatggacatcgagcgggtgaacattgccttt
aactacgacatgcctgaggattccgacacctacctgcaccgggtggccagagcaggccgt
tttggcaccaagggcttggccatcacgtttgtgtcagatgagaacgacgccaagatcctc
aatgatgtgcaggatcgctttgaggtcaacattagtgagctgcctgacgagatagacatc
tcctcctacattgaacagacacggtag
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