Escherichia ruysiae: OSH18_01675
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Entry
OSH18_01675 CDS
T09019
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
eruy
Escherichia ruysiae
Brite
KEGG Orthology (KO) [BR:
eruy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
eruy03032
]
OSH18_01675 (topA)
03400 DNA repair and recombination proteins [BR:
eruy03400
]
OSH18_01675 (topA)
Enzymes [BR:
eruy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
OSH18_01675 (topA)
DNA replication proteins [BR:
eruy03032
]
Prokaryotic type
DNA Topoisomerases
OSH18_01675 (topA)
DNA repair and recombination proteins [BR:
eruy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
OSH18_01675 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
DUF4795
Motif
Other DBs
NCBI-ProteinID:
WGM52904
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Position
327802..330399
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AA seq
865 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGSDYVVKSSVGHIRDLPTSGSAAKKSADSTSTKTAKKPK
KDERGALVNRMGVDPWHNWEAHYEVLPGKEKVVSELKQLAEKADHIYLATDLDREGEAIA
WHLREVIGGDEARYSRVVFNEITKNAIRQAFNKPGELNIDRVNAQQARRFMDRVVGYMVS
PLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEVDASTTTPSGEALALQVTH
QNDKPFRPVNKEQTQAAVSLLEKARYSVLEREDKPTTSKPGAPFITSTLQQAASTRLGFG
VKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVNMVRGYISDNFGNKYLPESPNQYASKEN
SQEAHEAIRPSDVNVMAESLKDMEADAQKLYQLIWRQFVACQMTPAKYDSTTLTVGAGDF
RLKARGRILRFDGWTKVMPALRKGDEDRILPAVDKGDSLSLVELTPAQHFTKPPARFSEA
SLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEENFRELMNY
DFTAQMENSLDQVANHEAEWKAVLDHFFSDFTQQLDKAEKDPEEGGMRPNQMVLTSIDCP
TCGRKMGIRTASTGVFLGCSGYALSPKERCKTTINLVPENEVLNVLEGEDAETNALRAKR
RCPKCGTAMDSYLIDPKRKLHVCGNNPTCDGYEIEEGEFRIKGYDGPIVECEKCGSEMHL
KMGRFGKYMACTNEECKNTRKILRNGEVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGVF
LAANTFPKSRETRAPLVEELYRFRDRLPEKLRYLADAPQQDPEGNKTMVRFSRKTRQQYV
SSEKDGKATGWSAFYVDGKWVEGKK
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagctcttgtcatcgttgagtccccggcaaaagccaaaacgatcaacaagtat
ctgggtagtgactacgtggtgaaatccagtgtcggtcacatccgcgatttgccgaccagt
ggctcagctgctaaaaagagtgccgactctacctccaccaaaacggctaaaaagcctaaa
aaggatgaacgtggcgctctcgtcaaccgtatgggggttgatccgtggcacaattgggag
gcgcactatgaagtgttgcctggtaaagagaaggtcgtctctgaactgaaacaactggct
gaaaaagccgaccacatctatctcgcaaccgaccttgaccgcgaaggggaagccattgca
tggcacctgcgggaagtgattgggggtgatgaagctcgctatagccgagtggtgtttaac
gaaattactaaaaacgcgatccgccaggcgttcaacaaacccggcgaactgaatattgat
cgtgttaatgcccagcaggcgcgtcgctttatggatcgcgtcgtgggttatatggtttct
ccgctgctgtggaaaaagatcgctcgcggtctttccgccgggcgtgtgcaatccgtagcg
gttcgcctggtggttgagcgtgagcgtgaaattaaagcgttcgtgccggaagaattctgg
gaagtcgatgccagtacgactacgccgtctggtgaagcgttggctttgcaggtgactcat
cagaacgataaaccgttccgcccggtcaacaaagaacaaactcaggctgcggtaagtctg
cttgaaaaagcgcgctacagcgtgctggaacgtgaagacaaaccgacaaccagtaaacca
ggcgctccttttattacctctacgctgcaacaagctgccagcacccgtcttggttttggt
gtgaaaaaaaccatgatgatggcgcagcgtctgtatgaagctggctatatcacttacatg
cgtaccgactccactaacctgagtcaggacgcggtaaacatggttcgcggttatatcagc
gataattttggtaataaatatctgccggaaagcccgaaccaatacgccagcaaagaaaac
tcacaggaagcgcacgaagcgattcgtccttcagatgtcaatgtgatggcggaatcgctg
aaagatatggaagcagatgcgcagaaactgtaccagttaatctggcgtcagtttgttgcc
tgtcaaatgaccccagcgaaatatgactccaccacgctgaccgttggcgcgggtgacttc
cgcctgaaagcgcgcggtcgtattctgcgttttgacggctggacgaaagttatgccagct
ctgcgtaaaggcgatgaagatcgtattttaccggctgtcgataaaggtgactccctgtcg
cttgttgaactgacgcctgcgcagcactttaccaagccgccagcccgttttagcgaagct
tcactggttaaagaactggaaaaacgcgggatcggtcgtccgtctacctatgcgtcgatc
atttcgaccattcaggatcgcggctatgtgcgtgtggaaaaccgtcgcttctatgcggaa
aaaatgggtgagatcgttaccgatcgcctggaagaaaatttccgcgagttaatgaattac
gactttaccgcgcagatggaaaacagcctcgaccaggtggcaaatcacgaagcagagtgg
aaagctgtactggatcacttcttctctgatttcactcagcagcttgataaagcggaaaaa
gatccggaagagggcggtatgcgcccgaaccagatggttctgaccagcattgactgcccg
acctgtggtcgaaagatggggattcgcaccgccagcaccggggtattcctgggctgttcc
ggttatgcgctgtcgccgaaagagcgttgcaaaaccaccatcaacctggtgccggaaaac
gaagtgcttaacgtgctggaaggcgaagacgctgaaaccaacgcgctgcgcgccaaacgt
cgttgcccgaaatgcggtacagctatggacagctatctcatcgatccaaaacgtaagttg
catgtctgtggtaataatccaacctgtgacggttacgagatcgaagagggcgaattccgt
attaaaggttatgacggcccgatcgttgagtgtgaaaaatgtggttctgaaatgcacctg
aaaatggggcgtttcggtaagtacatggcttgcaccaatgaagagtgtaaaaacacacgt
aagattttacgtaacggtgaagtcgcgccgccgaaagaagatccggttccgctgccagaa
ttaccgtgcgaaaaatcggatgcttatttcgtgttgcgtgacggcgctgccggcgtgttc
ctggcggccaatactttcccgaaatcacgtgaaacgcgtgcgccgctggtggaagagctt
tatcgcttccgcgaccgtttaccagaaaaattgcgttatctggctgatgcgccacagcaa
gatccagaaggtaataagacaatggttcgttttagccggaaaaccaggcagcaatatgtc
tcttcggaaaaagacggaaaggcaactggctggtcagcattttatgttgatggcaaatgg
gttgaagggaaaaaataa
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