Escherichia ruysiae: OSH18_11260
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Entry
OSH18_11260 CDS
T09019
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
eruy
Escherichia ruysiae
Brite
KEGG Orthology (KO) [BR:
eruy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
eruy03016
]
OSH18_11260 (rtcB)
Enzymes [BR:
eruy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
OSH18_11260 (rtcB)
Transfer RNA biogenesis [BR:
eruy03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
OSH18_11260 (rtcB)
Prokaryotic type
tRNA splicing ligases
OSH18_11260 (rtcB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
WGM50888
LinkDB
All DBs
Position
complement(2337554..2338780)
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AA seq
408 aa
AA seq
DB search
MNYELLITENAPVKMWTKGVPVEADARQQLINTAKMPFIFRHIAVMPDVHLGKGSTIGSV
IPTKGAIIPAAVGVDIGCGMNALRTALTAADLPENLAELRQSIETAVPHGRTTGRCKRDK
GAWENPPVNVDAKWAELEAGYQWLTQKYPRFLNTNNYKHLGTLGTGNHFIEICLDESDQV
WIMLHSGSRGIGNAIGTYFIDLAQKEMQEQLETLPSRDLAYFMEGTEYFDDYLKAVAWAQ
LFASLNRDAMMENVVTALQSITQKTVRLPQTLAMEEINCHHNYVQKEQHFGEEIYVTRKG
AVSARAGQYGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRVMSRTKAKKLFSVEDQIRA
TAHVECRKDAEVIDEIPMAYKDIDAVMAAQSDLVEVVYTLRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgaattacgaattactgatcactgaaaatgccccggtaaaaatgtggaccaaaggcgtg
ccggtagaagccgatgcgcgtcagcaattgataaatacagcgaaaatgccgtttattttc
agacatattgcggtaatgcctgatgtgcacctgggaaaaggttccaccattggtagcgtg
atcccaacgaaaggggcgattatcccggcggcggtaggtgtggatattggctgtggaatg
aatgcgctgcgtaccgcgttaacggcggcggatctgcctgaaaacctggcggagttgcgc
cagtcgattgaaactgccgtaccacacgggcgtactaccgggcgttgtaaacgtgataaa
ggcgcatgggaaaatccgcctgttaatgtcgatgctaaatgggccgagctggaagcgggt
tatcagtggttaacgcaaaaatatccgcgtttcctgaacactaataactacaaacacctg
ggaacgctgggaaccggcaaccactttattgaaatctgccttgatgagtcggatcaggtg
tggattatgctgcactccggttcacgcggaatcggtaacgccatcggaacttactttatc
gatctggcgcaaaaagagatgcaggaacagcttgaaacgttgccgtcgcgtgatctggcg
tactttatggaaggtacggaatattttgacgattacctgaaagccgtggcctgggcgcag
ctttttgccagccttaatcgagatgcaatgatggaaaacgtagtaacggcgttgcagagc
atcacgcagaaaacggtaagactgccgcaaactctggcgatggaagagatcaactgtcac
cacaactatgtgcaaaaagaacagcactttggcgaagagatctatgtgacgcgtaaaggc
gcggtatctgcgcgtgctggtcaatatggaattattcccggttcgatgggcgcgaaaagc
tttatcgtccgtgggctgggaaatgaagaatcattttgctcatgcagccacggtgccggg
cgggtaatgagccgtaccaaagcgaaaaaattgtttagtgtggaagatcagattcgtgcc
accgcgcatgtggaatgccgtaaagatgccgaagtgatcgacgaaattccgatggcgtat
aaagatattgatgcggtgatggcggcacaaagcgatctggtggaagtggtttacaccctg
cgtcaggtagtgtgcgtaaaaggataa
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