Erysipelothrix sp. Poltava: MX850_03295
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Entry
MX850_03295 CDS
T10367
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
erv Erysipelothrix sp. Poltava
Pathway
erv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
erv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MX850_03295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
erv03019
]
MX850_03295
Enzymes [BR:
erv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MX850_03295
Messenger RNA biogenesis [BR:
erv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MX850_03295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Utp25_C
AAA_22
CLN3
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
UPU39768
LinkDB
All DBs
Position
complement(460344..461771)
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AA seq
475 aa
AA seq
DB search
MEFKDLGINEKILQALTEQGYEKPTPIQEQAIPTLLKHNDLIGLAQTGTGKTAAFAVPTL
QNLKEKAFDRNGKRKIRALVLTPTRELAIQIQENFEMYGKYMDLRSTVVFGGVAQRYQVK
ALRNGVDTLIATPGRLEDLMSQGYIDLSQIEIFILDEADRMLDMGFINDVKRIIKKLPKK
KQTLLFSATMPSEISSIAEMLLNNPTTVAVTPVSSTVETVEQSVYYVDQRNKTQLLIDVL
ENKSFDSVLVFTRTKRGADRVARDLCRSNINAVAIHGDKSQGARQRALSGFKDGTINVMV
ATDIAARGIDINELKYVVNYELPEVPETYVHRIGRTGRAGFSGAAISFCNFEEIPLLKDI
EHVIQMRVPVIKSHNYPLLDKTIKDGKISKKKKSKLERIKAEESKTKKKPMKQKDSKSKG
KPKKKEKELNGPYDWSNHASKKAKKQSQNGKKPSGSRTRTKNQEQKTTNRRKKSA
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atggaatttaaagatttaggtatcaatgagaaaattttacaagcgttaacggaacaaggt
tatgaaaaacctacaccgattcaggaacaagcaattccaactttattaaaacataacgat
ttaattggactcgctcaaacaggtacaggaaagactgctgcttttgcggtaccaacgtta
caaaatttaaaagagaaagcatttgatcgtaatggaaaacgtaaaatacgtgcacttgta
ctcacgcccactcgtgaacttgccattcaaattcaagaaaattttgaaatgtatggtaag
tatatggatttacgttcaacagtagtttttggtggtgttgcgcaacgctaccaagttaaa
gcacttcgtaacggtgttgacacattgattgcgactcccggtcgtcttgaggatttgatg
agtcaaggttatattgacttatcgcagattgagatttttattctcgatgaagcggatcgc
atgttggatatgggatttattaatgatgtgaaacgcattattaaaaaacttcctaaaaag
aagcaaacacttcttttctctgcaacaatgccatcagaaatttcaagtattgcggagatg
cttttaaataatcctactacagtcgcagttacacctgtatcttctacagttgaaacagta
gagcaaagtgtttattatgtagatcaacgtaataagactcaacttctgattgatgtttta
gagaacaagtcttttgattctgttcttgtctttacacgtacaaaacgtggtgcagaccgt
gtggcacgtgatttatgccgtagtaacatcaatgcagtcgcaatccatggcgataagtca
caaggggcacgtcaacgtgctctgagtggatttaaagatggtacgattaatgtaatggtc
gcaacagatattgcggcgcgtggtattgatattaatgaattaaaatatgttgtgaattat
gaattgccagaagttcctgaaacatatgtgcatcgaattggtcgaacaggtcgtgcaggt
tttagtggcgcagcgatttcattctgtaattttgaagagattccattacttaaagatatt
gaacatgtgattcagatgcgtgttcctgtaattaagtcacataactatcctttacttgat
aaaacaatcaaggatgggaaaatcagtaaaaagaaaaagtctaagttagaacgtattaaa
gcagaagaatccaaaactaagaaaaaaccgatgaaacaaaaagattccaaatcaaaagga
aaacctaagaaaaaagaaaaagaactcaatggcccttatgattggagtaatcatgcttcg
aagaaagcaaagaaacaatctcaaaacggcaagaagccaagtggaagtcgtacacgaaca
aaaaatcaagaacaaaaaacaacaaatcgtcgtaaaaagtcagcataa
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