Erysipelothrix sp. Poltava: MX850_07005
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Entry
MX850_07005 CDS
T10367
Name
(GenBank) DEAD/DEAH box helicase
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
erv Erysipelothrix sp. Poltava
Pathway
erv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
erv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MX850_07005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
erv03400
]
MX850_07005
Enzymes [BR:
erv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MX850_07005
DNA repair and recombination proteins [BR:
erv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MX850_07005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
CarD_TRCF_RID
ResIII
Helicase_C
AAA_22
DUF3801
UB2H
AvrM_N
Motif
Other DBs
NCBI-ProteinID:
UPU38443
LinkDB
All DBs
Position
984152..986047
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AA seq
631 aa
AA seq
DB search
MSGNHYRLARELERLGYTRVKYVEKPFTYAIRGGVCDVFSIQMEQPLRIEFFDVEVDSLR
YFDIENQRSLSRVEEATIAFATDILLKENDIQEISNALTSKIEGIENNDLIHEMEQKREL
LQMNQFDVTLYPLLSFWSNYATIYDYLKDANTYMSPIEAIERTLKQNALDSHTFIEEQYE
MNQMIYVSDIFESFERIKAKHTHREIFEYQTEGEVFIPWHSANIVSESIEQTMKWLKKEA
ITQKVIITLDEDTMEDFIKIMLQQGVEYQVLTDKPTSNGIYIDYGHITSGFILEDLNTVV
YTANELYKYKKKMFRYDNKFLKAESLSRLSDLDTLDYVVHRQYGIGKYMGITTKEIEGIH
KDFMRILYRDGDELFVPLEQFNLVRKFMSREAASVRLSKLGTSTWQKNKERIKQDVADVA
DKLVTLYSTRMDASGFAFSPDTEYQKQFEDAFEYELTQDQKTAIDEIKRDMERDVPMDRL
LCGDVGFGKTEVAIRAAFKAFVDHKQVVFLCPTTILSQQHARTLKERLSDFPVTIEVLNR
FVSDKEKNEIIQRVKDGKVDILVGTHRVLSRDVKFKDLGLLIIDEEQRFGVEHKERIKEF
KVSVDVLSLSATPIPRTLQMSLIGLRSLSQT
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgagtgggaaccattacagacttgctcgagaacttgagcgtctaggttacacacgggtt
aagtatgttgagaaaccatttacgtatgctattcgtggtggggtttgtgatgtgttctca
atccaaatggaacaaccgctgcgaattgagttttttgacgtagaggtcgacagtcttcga
tatttcgatattgaaaatcagcgatctttatcaagagttgaggaagcaacaattgcgttt
gcgaccgatatccttcttaaagaaaatgatatacaagaaattagtaatgcattaacttcc
aaaatagaggggatcgaaaataacgatttgattcatgaaatggaacagaagcgcgagtta
ttacaaatgaatcaatttgatgtaaccttgtatccacttctttctttttggtcaaactat
gcaactatttatgattatcttaaagacgcaaacacatatatgagtccaattgaggcaatc
gaaagaacgctcaagcaaaatgcgttagattctcacacttttattgaagagcagtatgag
atgaatcagatgatttatgtttcagatatttttgagtcatttgaacgtatcaaagcgaaa
catacgcatcgagaaatttttgaataccagactgaaggcgaagtctttattccctggcat
tcagcaaatattgtatcggaaagtattgaacaaaccatgaagtggcttaaaaaagaagcc
attactcaaaaagtaataatcactttagatgaagatactatggaagattttattaagatc
atgctccaacaaggtgttgagtatcaagttttaacggataaaccaacctcaaatggaatc
tatatcgactatggtcatataacttcaggctttattcttgaggatttaaatacagttgtt
tataccgctaacgaattgtataagtataagaaaaaaatgttccgatacgataataaattc
ttaaaagcagaatctttaagtcgactttctgatctcgatacattagattatgttgtccac
agacaatatggaattggaaaatatatgggaatcacaacaaaagaaattgaaggaatccat
aaagattttatgaggattctttatcgtgatggtgatgagttgtttgtaccactcgaacaa
tttaatcttgtgagaaagtttatgtcacgtgaagcggcatctgtgcgccttagcaaactt
ggaacaagcacatggcaaaaaaataaagaacgtattaaacaagatgttgcggatgttgcg
gataaacttgtcacactctactctacaagaatggatgcaagtggatttgctttcagccca
gatacagagtatcaaaagcaatttgaagatgcatttgaatatgaattaacacaggatcag
aaaaccgcaattgatgagattaagcgtgatatggaacgcgatgttccgatggaccgtttg
ctttgtggtgatgttggatttgggaaaactgaagttgccattcgtgctgcatttaaagct
tttgtagaccataagcaagtcgttttcctttgtccaacaacaatcctttctcaacaacat
gctcgaacactcaaagaacgtcttagtgactttcctgtaacgattgaggttttaaatcga
tttgtttctgataaagaaaaaaacgaaataattcaacgtgttaaagatggaaaagttgat
attttagttggtacacaccgtgttttatcgcgtgatgttaagtttaaagatcttggactt
ttgattattgatgaagaacaacgcttcggtgttgagcataaagaacgtattaaggagttt
aaggtgtctgtggatgtattatccctcagtgcgactccaatacctcgaacactccaaatg
tctcttattgggctccgtagtctatcacagacttaa
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