KEGG   Ehrlichia ruminantium Welgevonden (France): ERWE_CDS_07670
Entry
ERWE_CDS_07670    CDS       T00233                                 
Symbol
mfd
Name
(GenBank) Transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
erw  Ehrlichia ruminantium Welgevonden (France)
Pathway
erw03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:erw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    ERWE_CDS_07670 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:erw03400]
    ERWE_CDS_07670 (mfd)
Enzymes [BR:erw01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     ERWE_CDS_07670 (mfd)
DNA repair and recombination proteins [BR:erw03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      ERWE_CDS_07670 (mfd)
SSDB
Motif
Pfam: DEAD TRCF Helicase_C CarD_TRCF_RID UvrB_inter MFD_D3 Cas3-like_C_2 HPPK AAA_19
Other DBs
NCBI-ProteinID: CAI27261
UniProt: A0A0H3M001
LinkDB
Position
1222852..1226220
AA seq 1122 aa
MNTVNYISNIPHTLEAFAIAEMYNKGLINSAIYITNQEDSLYQLSSIFQFYIPNLKVIVV
PAWNLIPYKKNSPNNLIMAERIKSLYSLTHTHNNTTTPYIIITTTNAVIQKVLPRNIISQ
IVFKITVQENLPIHYIKNYLITHGYTQYSTVQDIGEFCVNNTTIDIFPITYQNPIRIYLN
NDHVESIKTFDCKTQLIHTDSSINEIFIYPTSEVIKQQQNIEQFLKIYKTKANQDKHLLN
TIVSKKKYIGEENFLPLFYEEELEDIFNYIQDIQLIFSNKIIDQISQYNNNLRSNYKNSL
YYQIAPDQLYITLENFYSITKQLKKIIFLTVDELNYVNIDIQNPQCNVTKIKKIPNFKAL
AVQEQTDVFEIFAQYIKSQHHAYKLLIACHSVETLEYIQSKLAICQIKLNKINNYNEINN
TYNIAILQINNSFSTESTIIVTENDLLSTTSTTSISDIINYTIDLNIGDIVIHKDYGIGK
IAKLETIKVLDNYHDFLKIEYYNNDKLFLPVENINLITRYSNQDSNITLDRLGSTSWQQR
QTKLKNHIQKIAKELIRIEAARQLMQGTPFLPNNTYKNFCDEFAYTETTDQLQAIQDIEN
DLSGGKIMNRLICGDAGFGKTEVALRAAFLVAIKNYQVAVIVPTTLLCKQHFAVFTERFK
NFPNIKIQQLSKIVNKHEIKKIKENISYGHTHIIIGTHAILSQDVNFFNLSLVIIDEEQQ
FGVKQKELLKKIKANVHVLSLSATPIPRTLHMSLCGIKNFSLIKTPPKNRLPVITYTIHY
TDNTIKNAIIHEYERGGRTFYVCPQINNIKNINDNLIRLLPDIKIGIAHGQLPSHELENV
MNDFLDGKFTVLLTTSIIECGLDIPHANTIIIHNADMFGLAQLYQLKGRVGRSNIKGYAY
FILSDNINNISERRLEIIRSIDSINSGFALSLHDMDIRGFGNLIGEEQSGNIKDIGIELY
QQMLEEELNTNNQCYKNLHHININININIRIPEHYISDIGLRMNMYKRIGNLRTKEEIDS
FHIALIKKFGKLPDEVENLLDIIYIKQLCIPIGIYEIEQVKNIVNFKIHNNVTFPKMVLD
YLIHNPLILKIQNNSISMLVNNISSRITKLIIHHLKKITSLL
NT seq 3369 nt   +upstreamnt  +downstreamnt
atgaacaccgttaattatatctctaatataccacatacacttgaagcatttgctatagca
gaaatgtacaacaaaggactgattaactctgcaatatatataacaaatcaagaagattct
ttatatcaattatcatctatttttcaattctacattccaaaccttaaagtaattgtagtc
cccgcatggaacttaataccatataaaaaaaattcacctaacaatctaataatggcagaa
cgaataaaaagcttatactctttaactcatacacataataatactactactccatatatc
atcataacaacaactaatgcagtcatccagaaagtactgcccaggaacataatatcacaa
atagtatttaaaattacagtacaagaaaatcttcctatacactacattaaaaactatctt
ataactcatggatatactcaatactcaacagtacaagatattggtgaattctgtgtcaat
aacaccactatagacatatttcccataacatatcaaaatcctataagaatttacttaaat
aatgatcacgtagaatcaattaaaacatttgattgcaaaacacaattaatacatacagat
tcttctataaatgaaatattcatttacccaacttctgaagtaataaagcaacaacaaaat
atagaacagttccttaaaatttataaaacaaaggctaatcaggacaaacacttgttaaac
acaatagtctccaaaaaaaaatatataggagaagaaaatttcttacctttattttatgaa
gaagaattagaagatattttcaattatattcaagatatacagttaatatttagtaacaaa
ataattgatcaaatatcacaatataataacaacctaagatcaaattataaaaattcactg
tattatcaaatagctccagatcaattatatataactcttgaaaacttttactctattact
aaacaattaaaaaaaattattttcttaacagtagatgaactaaattatgttaacattgac
atacaaaacccacaatgcaacgttacaaaaatcaagaaaatacctaattttaaagcatta
gcagtacaagaacaaaccgatgtatttgaaatctttgcacaatacattaaaagtcagcat
cacgcatataagctattaatagcatgtcactctgtagaaaccttagaatatatacaaagc
aaacttgcaatatgtcagataaaactaaataaaataaataactataatgagatcaataac
acgtataacatagctatattacaaataaataacagtttctctaccgaatccacaataata
gtaacagaaaatgatttactgagcacaacgtctacaacaagtatatcagacattatcaat
tatactatcgatttaaatataggtgacatcgtaatacacaaagactatggcatcggcaaa
atagcaaaacttgaaactattaaagtattagataactatcacgatttcttaaaaatagaa
tactacaacaacgataagctatttttacctgtagaaaacattaatttgataactaggtat
agtaatcaagatagtaatattacactagataggctaggaagcacatcatggcagcaacgc
caaactaaattaaaaaaccatatacaaaaaattgcaaaagaactaattagaatagaagca
gcaagacaattaatgcagggcacaccttttctacctaacaatacttataaaaatttctgt
gatgaatttgcttatactgaaacaacagatcagctacaagctattcaagatatagagaat
gacctgtccggtggaaaaataatgaatcgacttatatgtggagatgcaggatttggaaaa
acagaagtagcattaagagcagcatttttagtagctataaaaaattatcaggttgcagta
atagtaccaactaccttattatgtaaacaacattttgctgtatttactgaaagatttaaa
aacttcccaaatataaaaattcaacaattatctaaaattgtgaataaacatgaaataaaa
aaaataaaagaaaacatatcatatggacacacacatattattataggaacacatgctata
ttatcacaagacgtaaatttctttaacttaagcctagtcattatagatgaagaacaacaa
tttggagttaaacaaaaagagttgctaaagaaaattaaagcaaatgtccatgtactgtca
ctatctgcaacaccaataccaagaacattacacatgtccctatgtggtataaagaatttc
agtttaataaaaacaccaccaaaaaacagattaccagttataacatatacaattcattac
accgacaacacgatcaaaaatgctataattcatgaatacgaaagaggtggaagaacattt
tatgtatgtccacaaattaacaacataaaaaatattaatgacaatttaattagattatta
ccagatatcaaaataggaattgcccatggtcaattgccttcccacgaacttgaaaatgtt
atgaatgatttccttgatggtaaatttacagtattacttacaacatcaatcatagaatgc
ggcttagatattccacatgctaacacaattataatacacaatgctgacatgtttggactt
gcacagctctatcaattaaaaggtagagtaggacgtagtaatattaaaggttatgcatat
tttatactatcggataacataaacaatatatcagagcgaagactagagatcatacgatca
atagattccataaactcaggatttgcgttatcacttcatgatatggatatcagaggattt
ggtaatttaattggagaagaacaatcaggaaatataaaagacataggtattgagttatat
caacaaatgttagaagaagagttaaatactaataatcaatgttataaaaatcttcaccat
ataaatatcaatattaatataaatattagaattccagaacattacattagtgacatagga
ttaagaatgaacatgtataaaagaataggtaatctaagaacaaaagaagagatagatagt
tttcatatagcacttattaaaaaatttggcaaattaccagatgaagtggagaatttatta
gatatcatatatataaaacagttatgtatacccattggcatttacgaaattgaacaagta
aaaaatattgtaaattttaaaatacacaataatgtaacttttccaaaaatggtattagat
tatttaatacacaatccattaattttaaagatacaaaacaacagcatttcaatgttagtt
aataatatctcatcacgtattacaaaactcataatacatcatctaaaaaaaataacatca
ctgctataa

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