Erwinia sp. E602: GKQ23_03895
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Entry
GKQ23_03895 CDS
T10706
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
erwe Erwinia sp. E602
Pathway
erwe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
erwe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GKQ23_03895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
erwe03019
]
GKQ23_03895
03009 Ribosome biogenesis [BR:
erwe03009
]
GKQ23_03895
Enzymes [BR:
erwe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GKQ23_03895
Messenger RNA biogenesis [BR:
erwe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GKQ23_03895
Ribosome biogenesis [BR:
erwe03009
]
Prokaryotic type
rRNA helicases
GKQ23_03895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
DRTGG
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QUG74195
LinkDB
All DBs
Position
540372..542315
Genome browser
AA seq
647 aa
AA seq
DB search
MTDIQTTFSDLGLNADILESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAF
SLPLLHNIDPTVKAPQILVLAPTRELAVQVAEAMTEFAKHMKGLNVVALYGGQRYDVQLR
ALRQGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPDG
HQTALFSATMPEAIRRITKRFMKDPQEVRIQSSMTTRPDISQSYWTAFGRKTDALTRFLE
AEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA
TDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE
RTMKLTIPEVDLPNAELLGQRRLEKFAAKVQQQLESSDLDQYRALLAKMQPEDELDIETL
AAALLKMAQGERPLIVAADAPQRPRREFRERDDRRDDRRGDRPDRGPREARAEGDRPRRE
RREVGDMEVYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIELPKGMPG
EVLQHFTRTRILNKPMNMQLIGDAQPRPERSADRGGERRPGGPGRGFGGGERRGPADGAR
GPSEGGRRFSNERSGERRSGGFSRDGGASRGPRREEAGAAPARRRDA
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgactgatatccaaaccactttttccgaccttggcctgaacgctgacatccttgaatca
ctgaacggcatgggctacgtgaagccatccccaatccaggctgagtgtattcctcacctg
ctggcgggccgtgacgtgttaggcatggcgcagaccgggagcggtaaaaccgcggccttc
tctctgccgctgttacacaacattgatccaaccgttaaagcaccacagattctggtgctg
gcaccgacccgcgaactggcggtgcaggttgctgaggcaatgaccgaattcgctaaacac
atgaaaggcctgaacgtggtggccctgtacggcggccagcgttatgacgttcagctgcgc
gctctgcgccagggtccacaggttgttgtgggcaccccgggtcgtctgctggatcacctg
aagcgcggtacccttgacctgtctaacctgcgtggcctggtgctggacgaagccgatgaa
atgctgcgtatgggcttcatcgaagacgttgaaaccatcatggcgcagatcccggacggt
caccagaccgcgctgttctctgccaccatgccggaagcgatccgtcgcatcaccaagcgt
ttcatgaaagatccgcaggaagtgcgcatccagtcaagcatgaccacccgtccggacatc
agccagagctactggactgcattcggccgtaaaactgacgcgctgacccgcttcctggaa
gctgaagactttgacgctgcgatcatcttcgtgcgtaccaaaaacgccacgctggaagtg
gccgaagcgctggagcgcagcggttacaacagcgccgcgctgaacggtgacatgaaccag
gcactgcgtgagcagacgctggagcgtctgaaagacggtcgtctggacatcctgatcgcc
accgacgttgcggcccgtggcctggacgttgagcgtatcagcctggtagtaaactacgac
attcctatggatgccgagtcttacgttcaccgtatcggccgtaccggtcgtgcgggccgt
gctggccgtgcgctgctgttcgttgagaaccgcgagcgtcgtctgctgcgcaacattgaa
cgcaccatgaagctgaccattcctgaagtggatctgccaaacgcagaactgctgggccag
cgtcgcctggagaagttcgcggctaaagttcagcagcagctggaaagcagcgatctggac
cagtaccgtgcgctgctggctaaaatgcagccggaagacgagctggacatcgaaacgctg
gccgcagcactgctgaaaatggcccagggcgaacgtccactgatcgtggctgctgatgca
ccacagcgtccgcgccgtgaattccgtgagcgtgacgatcgtcgtgatgaccgtcgtggc
gatcgtccggaccgtggtccgcgtgaagcccgtgcagaaggcgaccgtccacgtcgcgag
cgtcgcgaagttggcgatatggaagtttaccgcattgaagtgggccgtgatgacggcgtt
gaagtgcgtcacatcgttggcgctatcgctaacgaaggcgacatcagcagccgttacatc
ggtaacatcaagctgttcggtacccactccaccatcgagctgccgaaaggcatgccgggc
gaagttctgcagcacttcacccgcacgcgcatcctgaacaagccgatgaacatgcagctg
atcggtgacgcgcagccgcgtcctgaacgcagcgctgaccgtggcggcgaacgtcgtcca
ggcggcccgggccgtggtttcggcggcggtgagcgtcgtggtcctgctgatggcgcacgt
ggtccttctgaaggcggtcgtcgcttcagcaacgagcgcagcggtgagcgtcgcagcggc
ggtttcagccgtgacggtggcgcttcccgtggcccgcgtcgcgaagaagccggtgcagca
cctgcccgtcgtcgtgatgcataa
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