Erwinia sp. E602: GKQ23_09240
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Entry
GKQ23_09240 CDS
T10706
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
erwe Erwinia sp. E602
Pathway
erwe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
erwe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
GKQ23_09240 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
erwe03400
]
GKQ23_09240 (sbcB)
Enzymes [BR:
erwe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
GKQ23_09240 (sbcB)
DNA repair and recombination proteins [BR:
erwe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
GKQ23_09240 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
GKQ23_09240 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GKQ23_09240 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
QUG75162
LinkDB
All DBs
Position
complement(1726981..1728408)
Genome browser
AA seq
475 aa
AA seq
DB search
MKNETAQPTFLFHDYETFGKSPSLDRPAQFAAIRTDMDFNPIGEPEVFYCRPADDYLPQP
EAVMITGITPQVARARGVSEAEFTQRIHQLFSQPNTCVVGYNNVRFDDEVTRNLLYRNFY
DPYAWSWQHGNSRWDLLDVMRACYALRPDGINWPENDDGFPSFRLEHLTRANGVAHENAH
DAMSDVWATIAMAKLVKEKQPRLYDFLFSHRNKQKIGTLIDIPQMKPLVHISGMFGAARG
NTSWVAPLAWHPDNRNALITCDLAGDLTPLLELDATQLRERLYTRRDELGDLTPVPLKLL
HINKCPVVAPANTLRPEDAERLGVDRQRCLANLALLRQHPEIREKVVALYAEAEPFAASD
DVDAQLYNGFFSDADRQAMNIIRQTPPAHLPALDITFNDARIEKLLFRFRARNFPGTLDD
AEQQRWLQHRREALSPERVQRYLQELEMLASQHEGDEAKLSQLKALFEYGRELVS
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
ttgaagaacgaaactgcacagcctaccttcctcttccatgattacgaaaccttcggtaaa
agtccgtcgctggaccgccctgcgcagtttgcggcgatccgcaccgatatggatttcaac
ccgatcggcgagccggaggtgttttactgccggcctgccgacgactatctgccgcagccg
gaagcggtgatgattaccggcatcaccccacaggtggcgcgggcgcgcggcgtcagcgag
gcggagtttacccagcgcattcaccagctgttcagccagccgaatacctgcgtggtcggc
tacaacaacgtgcgtttcgacgacgaagtgacccgcaacctgctgtaccgcaatttctac
gatccgtacgcctggagctggcagcacggcaacagccgctgggatctgctggacgtgatg
cgcgcctgctatgcgctgcgcccggacggcatcaactggccggaaaacgatgacggcttc
ccgagcttccgcctggagcacctgacccgcgccaacggcgtggcgcatgaaaatgcccac
gacgcgatgtccgacgtctgggcgaccatcgccatggcgaagctggtgaaggagaagcag
ccgcggctgtacgatttcctgttcagccaccgcaataagcagaagatcggcacgctgatt
gatattccgcagatgaagccgctggtgcatatctccggcatgttcggcgcggcgcgcggc
aataccagctgggttgcgccgctggcctggcacccggataaccgcaacgcgctgatcacc
tgcgacctggccggcgatctcaccccgctgctggagctggacgcaacacagctgcgtgaa
cggctgtatacccgccgtgatgaactaggtgacctgacgccggtgccgctgaagctgctg
catatcaacaagtgcccggtggtggccccggccaataccctgcgcccggaagatgccgaa
cggctgggggtggaccgtcagcgctgtctggcaaatctcgccctgctgcgccagcacccg
gaaatccgtgaaaaagtggtggcgctgtatgccgaggccgaaccgtttgccgcttcagat
gacgtggatgcgcagctgtataacggcttcttcagcgatgccgatcgccaggcgatgaac
attattcgccagacgccccctgcccatctgccggcgctggatatcacctttaacgacgcg
cgcatagagaagctgctgttccgcttccgcgcgcgcaacttccccggcacgctggacgac
gccgagcagcagcgctggctgcagcaccgccgcgaagcgctcagcccggagcgggtacag
cgctatctgcaggagctggagatgctggccagccagcatgaaggggatgaggcgaaactg
agtcaacttaaggcgctgtttgagtacggccgcgagctggtctcgtaa
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