Erwinia sp. E602: GKQ23_12545
Help
Entry
GKQ23_12545 CDS
T10706
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
erwe Erwinia sp. E602
Brite
Enzymes [BR:
erwe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GKQ23_12545 (hrpA)
Messenger RNA biogenesis [BR:
erwe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
GKQ23_12545 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
QUG75772
LinkDB
All DBs
Position
complement(2457045..2460944)
Genome browser
AA seq
1299 aa
AA seq
DB search
MSEKPQSVLTPLFDRLPALMLRDGQRLQKRLHGAKKISNPAALQALLGELEGEIASAEQR
IATRRAATPTIRYPENLPVSQKKQAIAEAIRDHQVVIVAGETGSGKTTQLPKICLELGRG
LRGLIGHTQPRRLAARTVADRIASELETSLGGCVGYKVRFNDQVGETSQVKLMTDGILLA
EIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPRRPDLKVIITSATIDPQRFSRH
FNNAPVIEVSGRTYPVEVRYRPVVDDADDSERDQLQAIFDAVDELGDESPGDILIFMSGE
REIRDTADALTKRNLRNTEILPLYARLSNAEQNRVFQSHSGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSFRTKVQRLPIEPVSQASANQRKGRCGRVSEGICIRLYAEDDFLSR
PAFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGALTVNDV
GHYKLTASGRSLAQLPVDPRLAKMVLEAQRFGCVREAMIITAALSIQDPRERPSDRQQAS
DEKHRRFADKDSDFTAYVNLWNYLKEQQAELSSSQFRRQCKLDFLNYLRVREWQDIYTQL
RQVVRELGMPVNSEPAPFREVHCALLTGLLSHIGQKDAEKQEFTGARNARFALFPGSGLF
KKPPKWTMVAELVETSRLWGRIAARIEPEWIEPLAQHLIKRSYSEPHWEKAQGAVMATEK
VTLYGLPIVAARKVNYGQIDPVLSRELFIRHALVEGDWQTRHAFFKANLKLREEVEELEH
KSRRRDILVDDETLFGFYDQRIGHEVVSARHFDQWWKIAGREDPEKLSFAREMLIRDGAE
NVSKLDYPNFWQQGNLKLRLSYQFEPGADADGVTVHVPLPLLNQVEEKGFEWQIPGIRRE
LVIALIKSLPKPLRRNFVPAPNYAEAFLGRATPLALPLLESLEREFRRMSGVTLDREAWQ
WDQVPDHLKITFRVVDENNRKLAEGKDLPALKENLKGKVQETLSKVADDGLEQSGLHIWS
FGNLPDHFEQKRGSYSVKAWPALVDENDSVAIRLFDSQHEQQKAMWRGQRRLLLLNIPSP
IKYLHEKLPNKAKLGLYFNPYGKVLDLIDDCIACGVDKLISENGGPSWQEEGHTRLHDKV
RAELNDTVVDIAKLVEQILTAVFNINKRLKGRVDMSMALALSDIKAQMSGLVYRGFVTGN
GWKRLPDTLRYLQAIERRMEKLAVDPHSDRARMLKVDSVQKAWSQWFNKLPQQRRDDADV
QEIRWMIEELRVSFFAQQLGTPYPISEKRILQAMEQVDI
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagaaaccacaatctgttctgaccccgctgtttgaccgcctgccggcgctgatg
ctgcgcgacggccagcggctgcaaaagcgcctgcacggtgcgaaaaaaatcagcaatccg
gccgcgctgcaggcgctgctgggcgaactggagggcgagatcgccagcgccgagcagcgt
atcgccacgcgccgcgccgccacgccgaccatccgctacccggaaaacctgccggtcagc
cagaagaagcaggcgattgccgaagcgatccgcgaccaccaggtggtgatcgtcgccggt
gaaaccggctcgggtaaaaccacccagctgccgaaaatctgcctcgagctgggccgcggc
ctgcgcggcctgatcggccacacccagccgcgccggctggcggcgcgcacggtcgccgac
cgtatcgccagcgagctcgaaaccagcctcggcggctgcgtcggctataaggtgcgtttc
aacgatcaggtcggcgagaccagccaggtcaagctgatgaccgacggtatcctgctggcg
gagatccagcaggaccgcctgctgatgcagtacgacaccatcattatcgatgaggcgcac
gaacgcagcctgaacatcgacttcctgctcggctacctgcgcgagctgctgccgcgccgc
ccggatctgaaggtgattatcacctcggcgaccatcgatccgcagcgcttctcgcgccac
tttaataacgcgccggtgattgaagtctccggccgcacctatccggtggaagtacgctac
cgcccggtggtcgatgacgccgacgacagcgagcgcgaccagctgcaggcgatcttcgac
gcggtggatgagctgggggacgagagccccggcgatattctgatctttatgagcggcgaa
cgggaaatccgcgacaccgccgacgcgctgaccaaacgcaacctgcgcaataccgaaatc
ctgccgctctacgcacgcctctctaacgccgaacagaaccgcgtattccagtcgcacagc
gggcggcgcatcgtgctggcgaccaacgtggcggaaacctcgctgaccgtgccgggcatt
aagtacgtcatcgaccccggcaccgcgcgcatcagccgctacagcttccgcaccaaggtg
cagcgcctgccgatcgagccggtgtcgcaggcctcggccaaccagcgtaagggccgctgc
ggccgcgtgtcggaagggatctgtattcgtctctacgccgaggacgacttcctcagccgc
ccggcgtttaccgacccggagatcctgcgcaccaaccttgcgtcggtgatcctgcagatg
accgcgcttggcctcggtgacatcgccgcgtttccgtttgtcgaagcgccggataaacgc
aatatccaggacggcgtgcggctgctcgaagagctgggggcgctgaccgtcaacgacgtt
ggccactataagctgaccgcctccgggcgttcgctggcgcagctgccggtggatccgcgg
ctggcaaaaatggtgctggaagcgcagcgctttggctgcgtgcgcgaggcgatgattatt
accgccgcgctgtcaattcaggacccgcgcgaacgcccgtccgaccgccagcaggcgtcg
gacgagaagcaccgccgctttgccgataaagactcggacttcaccgcttacgttaacctg
tggaactaccttaaggagcagcaggccgaactctcttcaagccagttccgccgccagtgc
aagctggacttcctcaactacctgcgcgtgcgcgaatggcaggatatctacacccagctg
cgccaggtggtgcgggagctggggatgccggtcaacagcgaaccggccccgttccgcgag
gtgcactgcgcgctgctgaccggcctgctgtcgcatatcggccagaaggacgcggagaag
caggagtttaccggcgcgcgcaacgcccgttttgcgctgttccccggctccggcctgttt
aaaaagccgccgaagtggacgatggtcgccgaactggtggagaccagccgcctgtggggg
cgcattgccgcacgcatcgagccggagtggattgagccgctggcacagcacctgatcaag
cgcagctacagcgaaccgcactgggaaaaagcgcagggcgcggtgatggcgacagagaag
gtaacgctgtacggcctgccgattgtcgcggcgcgtaaggtcaactacggtcagattgac
ccggtgttgtcacgcgagctgtttatccgccacgcgctggtggagggcgactggcagacc
cgccacgccttctttaaggccaaccttaagctgcgcgaggaggtggaagagctggagcac
aagtcgcgccgccgcgatatcctcgtcgacgatgagacgctgtttggcttttacgaccag
cgcatcggccatgaggtggtctccgcccgccattttgaccagtggtggaaaatcgccggc
cgtgaggacccggaaaaactgagctttgcccgcgagatgctgatccgcgacggcgcggaa
aacgtcagcaagctcgattacccgaacttctggcagcagggcaatcttaaactgcgcctc
agctaccagtttgaaccgggggccgacgccgacggcgtcaccgtgcacgtgccgctgccg
ctgctcaaccaggtggaagagaagggttttgagtggcagatccccggcatccgccgtgag
ctggtgattgcgctgattaaatcgctgccgaagccgttacgccgtaactttgtcccggcc
cctaactatgccgaagccttcctggggcgcgccacgccgctggcgctgccgctgctggag
tcgctggagcgcgagttccgccgcatgtccggcgttacccttgaccgcgaggcctggcag
tgggatcaggtgcccgatcacctgaaaatcaccttccgcgtggtggacgaaaacaaccgc
aagctggcggagggcaaagatctgccggcgctaaaggagaacctgaagggcaaggtacag
gagacgctgtcgaaggttgccgacgacgggctggagcagagcgggctgcatatctggagc
tttggcaacctgccggatcacttcgagcagaagcgcggcagctacagtgtgaaggcgtgg
ccggcgctggtggacgaaaatgacagcgtggcgatccgcctgtttgactcgcagcacgaa
cagcagaaggcgatgtggcgcggccagcggcgactgctgctgcttaacatcccgtcgccg
atcaagtatctgcatgagaagctgccgaacaaggccaagcttggcctctactttaacccc
tacggcaaggtgctggacctgatcgacgactgcattgcctgcggcgtcgacaagctgatc
tctgaaaacggcggcccgagctggcaggaagagggccacacgcggctgcacgacaaggtg
cgcgccgaactgaacgacaccgtggtcgacatcgctaaactggttgagcagatcctcact
gcggtgttcaacatcaacaagcggctgaaggggcgagtggatatgtcgatggcgctggcg
ctctccgacatcaaagcgcagatgtccgggctggtctatcgcggttttgtcaccggcaac
ggctggaagcgcctgccggatacgctgcgctatctgcaggccattgaacgccggatggag
aagctggcggtcgacccgcacagcgaccgcgcgcgcatgctcaaggttgattcggtacag
aaggcctggagccagtggtttaacaagctgccgcagcagcgccgcgacgatgctgacgtg
caggagatccgctggatgattgaagagctgcgcgtcagcttcttcgcccagcagctgggc
acgccgtacccgatttcggagaagcgtattctgcaggcgatggagcaggttgatatctga
DBGET
integrated database retrieval system
