Erwinia sp. E602: GKQ23_12745
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Entry
GKQ23_12745 CDS
T10706
Symbol
pdeR
Name
(GenBank) cyclic di-GMP phosphodiesterase
KO
K14051
c-di-GMP phosphodiesterase Gmr [EC:
3.1.4.52
]
Organism
erwe Erwinia sp. E602
Pathway
erwe02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
erwe00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
GKQ23_12745 (pdeR)
Enzymes [BR:
erwe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
GKQ23_12745 (pdeR)
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GFIT
Motif
Pfam:
EAL
GGDEF
PAS_9
PAS
PAS_4
PAS_10
GGDEF_2
Motif
Other DBs
NCBI-ProteinID:
QUG75810
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All DBs
Position
2505240..2507225
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AA seq
661 aa
AA seq
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MTDEQGQSLMYAWFGTHSPHWRLTSDSDALQFAKDEGGVTSIAVALSPGQASMLRAMTVI
TSSVNLSLAIYGNDLSLHLVGRKVSQSAWAGSASAWGDTSSVARDLVHGLSFAEQVVSEA
NSVIVILDQHGHIQRFNRLSEEYTGLKEQEVIGRNVFKLFMTREEAIASRRNVAHFFREG
SSYEVERWVKTKKGQRLFLFRNKFVHSGSGKNEIFLICSGTDITEERRAQERLRVMANTD
TVTGLPNRNSINQDISAALEKRVNGQVGVVYLDLDNFKKVNDAYGHMFGDRLLQAVSLAI
LSCLEEQQTLARLGGDEFIILAEQTSQLALEALASRILDRLKQPFRIGLIEVYSGCSIGI
AFAPQHGEDRDSLIRNADTAMYTAKEGGRGRFSMFCSEMNQRVFEYIWLDTNLRKALELS
QLVIHYQPKLNADNSVTSVEALVRWMSPERGLVRPDSFISYAEESGLIVPLGRWVMLSVL
EQIKRWRVMGIDLRVAVNVSPRQLIDQSIYSDLKHALNEAGIVGCPIDIELTESCLIENE
QQALDLMQQFQKLGAAVHLDDFGTGYSSLSQLARVPIDAIKLDQSFIRGVDSQKVSQSLV
RAIVAVARALDLQVIAEGVETPEEEAFAIASGVDLRQGYLYAKPMPAGELEHWLKQRAAK
D
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatgaacaggggcagtcgctgatgtatgcctggtttggcacccacagccctcat
tggcgtttaacttctgacagcgatgccctgcagtttgccaaagatgaaggcggcgtcacc
agtatcgccgtggcgctgagccccggtcaggccagcatgctgcgcgcgatgacggtgatc
acctccagcgttaacctcagcctggcgatctacggcaacgacctgtcgctgcacctggtt
ggccgcaaggtcagccagtcggcgtgggccggttcggcgtctgcctggggcgatacctca
tcggtcgcgcgtgacctggtgcacggtctctcctttgccgagcaggtggtatccgaagcc
aactcggtgatcgtcatcctcgatcagcacgggcatatccagcgttttaaccgcctgagc
gaagagtacaccggcctgaaggagcaggaggtgatcgggcgcaacgtgttcaaactgttt
atgacccgcgaagaagcgatcgcctcgcgccgcaacgtggcgcacttttttcgtgaaggc
agctcgtatgaggtagagcgctgggtcaaaaccaaaaaaggccagcgcctgttcctgttc
cgcaataaatttgtccacagcggcagcggtaaaaatgaaatcttcctgatctgctccggc
accgatattaccgaagagcgccgtgctcaggaacggctgcgggtgatggccaatacggac
acggtgaccggcctgccgaaccgcaactcgatcaaccaggatatcagcgccgcgctggaa
aaacgtgtcaatggccaggtcggggtggtgtatctcgatctcgacaacttcaagaaggtc
aacgacgcctacggccatatgtttggcgaccggctgctgcaggcggtgtcgctggcgatc
cttagttgtcttgaagagcagcagaccctcgcccgcctcggcggcgatgagtttattatc
ctggcggagcagaccagccagctggcgctggaggcgctggcctcacgcattctcgaccgc
ctgaagcagccgttccgcattggcctgatcgaggtctactccggctgctcgatcggcatc
gccttcgccccgcagcacggtgaggatcgcgacagcctgatccgcaatgccgataccgcg
atgtataccgccaaagagggcggacgcggccgcttcagcatgttctgctccgagatgaac
cagcgggtgtttgagtatatctggctggacaccaacctgcgcaaagcgctggagctgagc
cagctggtgatccactatcagcctaagctcaacgccgacaacagcgtgaccagcgttgag
gcgctggtgcgctggatgtcgccggaacgtggactggtgcgaccggacagctttatctcc
tacgccgaggagtccgggctgatcgtgccgcttggccgctgggtaatgctgtcggtgctg
gagcagattaaacgctggcgagtgatggggattgacctgcgggtggcggtgaacgtgtcg
ccgcgtcagctgatcgaccagagcatctattccgatctgaagcatgcgctgaacgaggcg
gggattgtcggctgcccgattgatatcgagctgaccgagagctgcctgattgagaatgag
caacaggcgctggacctgatgcagcagttccagaaactgggggcggcggtgcatctggat
gattttggcaccggctattcgtcgctgtcgcagctggcacgggtgccgattgacgcgatt
aagctcgaccagagctttatccgcggagtggattcgcaaaaagtctcgcagtcgctggtg
cgggcgattgtagcggtggcgcgcgcgctggatctgcaggtgattgccgaaggggtggaa
accccggaggaggaggcgtttgccatcgccagcggcgttgacctgcgccaggggtatctg
tatgcaaagccaatgcccgccggggagctcgagcactggcttaaacaacgtgccgctaag
gattaa
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