Erwinia sp. E602: GKQ23_12815
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Entry
GKQ23_12815 CDS
T10706
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
erwe Erwinia sp. E602
Brite
KEGG Orthology (KO) [BR:
erwe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
erwe03032
]
GKQ23_12815 (topA)
03400 DNA repair and recombination proteins [BR:
erwe03400
]
GKQ23_12815 (topA)
Enzymes [BR:
erwe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
GKQ23_12815 (topA)
DNA replication proteins [BR:
erwe03032
]
Prokaryotic type
DNA Topoisomerases
GKQ23_12815 (topA)
DNA repair and recombination proteins [BR:
erwe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
GKQ23_12815 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
CK_II_beta
Toprim_2
DUF7784
Motif
Other DBs
NCBI-ProteinID:
QUG75823
LinkDB
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Position
complement(2519172..2521769)
Genome browser
AA seq
865 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSGSTVKKSADSTTSKTTKKVK
KDEKAALVSRMGIDPYHDWEANYQILPGKEKVVAELKALAEKADHIYLATDLDREGEAIA
WHLREVIGGDESRYSRVVFNEITKNAIRQAFDKPGELNIDRVNAQQARRFMDRVVGYMVS
PLLWKKVARGLSAGRVQSVAVRLVVEREREIKAFVPEEYWELAADLQTPKGVALPVQVTH
QGDKPFRPVNREQTEAAVSLLEKARYLVSEREDKPTSSKPGAPFITSTLQQAASTRLGFG
VKKTMMMAQRLYEAGHITYMRTDSTNLSQDAVSMVRGYIEDEFGKKYLPKDANTYSSKEN
SQEAHEAIRPSDVKIQSEQLKDMENDAQKLYQLIWRQFVACQMMPAQYDSTTLTVEAAGF
KLKAKGRTLRFDGWTRVMPALRKGDEDRTLPPVDVGSELSLQELLPSQHFTKPPARFSEA
SLVRELEKRGIGRPSTYASIISTIQDRGYVKVESRRFYAEKMGEIVTDRLEQNFRELMNY
DFTAHMEDNLDKVANNQAQWKGVLDAFFGDFTQQLQQAEKDPEEGGMQPNQMVITSIDCP
TCNRQMGIRTASTGVFLGCSGYALPPKERCKQTINLIPENEVLNVLEGDDAETNALRARR
RCQKCGTAMDSYLIDNQRKLHVCGNNPECDGYEIEQGEFRIKGYDGPIVECEKCGSEMHL
KMGRFGKYMSCTNDDCKNTRKILRNGEVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGVF
LAANTFPKSRETRAPQVEELQRFRDRLPEKLRYLADAPAADDEGNKAVVRFSRKTKQQYV
STDKEGKATGWTAFFVDGEWQVTKK
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaagctctcgtaatagttgaatccccggcaaaagccaaaacgatcaataaatat
ctcggcaatgactacgtggtgaaatccagcgtgggccatatccgcgatttgccgaccagc
ggatcaacggttaaaaagagcgctgactctacaaccagtaaaacaaccaaaaaagttaag
aaagatgagaaagcggcgctggtcagccgcatgggcatcgacccgtaccacgactgggag
gcgaactatcagatcctgcccggtaaagagaaagtggtggcggagctgaaggcgctggca
gaaaaagctgaccatatctatctcgcaaccgaccttgaccgcgaaggggaagccattgcc
tggcacctgcgagaagtgatcggtggcgatgagtcacgctacagccgcgtggtgtttaac
gaaattactaagaatgcgattcgtcaggcgtttgacaagccgggcgaactgaatatcgac
cgcgttaacgcccagcaggcgcgccgctttatggaccgcgtggtgggctatatggtgtcg
ccgctgctgtggaagaaagtggcccgtggcctctccgcagggcgcgtacagtcggttgcc
gtgcggctggtggtggagcgtgagcgcgagatcaaagccttcgtcccggaagagtactgg
gagctggcggccgatctgcagacgccaaaaggggttgcgctgccggtgcaggtcacccat
cagggcgataagccgttccgtccggttaaccgtgagcagaccgaggcggccgtcagcctg
ctggaaaaggcgcgctaccttgtctctgagcgggaagataaaccgaccagcagcaagccg
ggtgcaccttttattacctccacgctgcagcaggcggccagcacccggcttgggtttggc
gtcaagaaaaccatgatgatggcgcagcggctgtacgaagcgggtcatatcacctatatg
cgtaccgactccaccaacctgagtcaggatgcggtgagcatggtgcgcggctacatcgaa
gatgaattcggtaaaaagtatctgccgaaggatgccaacacctacagcagcaaagaaaac
tcgcaggaagcgcacgaggcgatccgtccgtccgacgtgaagatccagtctgagcagctg
aaggatatggaaaacgacgcgcagaagctttatcagctgatctggcgtcagttcgtggcc
tgccagatgatgccggcgcagtatgactcaaccacgctgaccgtcgaagcggccggcttt
aagctgaaagccaaagggcgtacgctgcgctttgacggctggacgcgggtgatgcccgcg
ctgcgcaagggcgatgaagatcgtaccctgccgccggtggacgtcggcagcgaactgtcg
ctgcaggaactgctgccgagccagcacttcaccaagccgccggcgcgcttcagcgaagcc
tcgctggtgcgcgagctggaaaaacgcggcatcggccgcccgtccacctatgcatcgatc
atttcgaccattcaggatcgcggctacgttaaggtcgagagccgccgtttctacgccgag
aagatgggtgaaatcgtcaccgatcgtctggagcagaacttccgcgagcttatgaactat
gacttcaccgcgcatatggaagacaacctcgacaaggtggccaataaccaggcgcagtgg
aaaggggtgctggatgccttcttcggtgatttcacccagcagctgcagcaggccgagaaa
gatccggaagagggcggtatgcagcccaatcagatggtgattacctcgattgactgcccg
acctgtaaccgccagatgggcatccgcaccgccagcaccggggtattcctcggctgctcc
ggctatgcgctgccgccgaaagagcgctgtaagcagaccatcaacctgattccggaaaat
gaagtgctgaacgttctggaaggggatgatgcggaaaccaacgccctgcgcgcccgtcgc
cgctgccagaagtgcggcacggcgatggacagctacctgatcgacaaccagcgcaagctg
cacgtctgcggtaacaacccggagtgtgacggctacgaaatcgaacagggtgagttccgc
atcaagggttatgacggcccgatcgttgagtgtgagaagtgtggttctgagatgcacctg
aaaatgggccgtttcggtaagtacatgtcctgcaccaacgacgactgcaagaacacccga
aagatcctgcgtaacggtgaagtcgcgccgccgaaggaagatccggtgccgctgccggaa
ctgccgtgcgagaagtcagacgcctacttcgtgctgcgtgacggtgcggccggcgtgttc
ctcgccgccaacaccttcccgaaatcgcgcgaaacccgcgcgccgcaggtggaggagctg
cagcgtttccgcgaccgtctgccggagaaactgcgctacctggccgatgcgccagcggcg
gatgacgaaggcaacaaggcggtggttcgcttcagccgtaaaaccaaacagcagtacgtc
agcaccgataaagagggtaaagccaccggctggacagccttcttcgttgacggcgagtgg
caggtgaccaaaaagtaa
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