Erwinia sp. E602: GKQ23_16975
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Entry
GKQ23_16975 CDS
T10706
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
erwe Erwinia sp. E602
Pathway
erwe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
erwe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GKQ23_16975 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
erwe03019
]
GKQ23_16975 (rhlE)
Enzymes [BR:
erwe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GKQ23_16975 (rhlE)
Messenger RNA biogenesis [BR:
erwe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GKQ23_16975 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QUG76585
LinkDB
All DBs
Position
complement(3389781..3391247)
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AA seq
488 aa
AA seq
DB search
MSFDSLGLNADILRAVAEQGYNEPTPIQRQAIPVVLAGRDLMASAQTGTGKTAGFTLPLL
QRLSSSNPHPKGRRPVRALILTPTRELAAQVAENVHDYSKYLDLRSLVVFGGVSINPQMM
KLRSGVDVLVATPGRLLDLEHQNALDLSKVEILVLDEADRMLDMGFIHDIRRVLAKLPAK
RQNLLFSATFSDEIKGLAEKLLHNPEQVEVARRNTASEQVTQHVHFVDKKRKRELLSLMI
GKGNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALSDFKSGGIRVLV
ATDIAARGIDIEELPHVVNFELPNVPEDYVHRIGRTGRAAAVGEALSLVCVDEHKLLRDI
ERVLKREVPRMALEGFEPDPSIKAEPIVNGRQQQRGGGGGGRGRGQGQGQGRGNGGGERS
GNRGGNSAAAGTGNGGERRQASGERRQGNGGNAGNGSAAARGGRSEGGSGAPRVNQTRQR
RGNSSNNG
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgattctctcggccttaatgccgatattctgcgcgctgttgccgaacagggc
tataacgagcctacgccaatccagcgccaggccattccagtggtactggccggccgcgac
ctgatggccagcgcccagaccggtaccggtaaaaccgccggtttcaccctgccactgctg
cagcgcctgagcagcagcaacccgcacccgaaaggccgtcgcccggtacgtgcgctgatt
ttaaccccaacccgcgagctggcagcgcaggttgctgaaaacgttcacgactacagcaag
tacctcgacctgcgttcgctggtggtgtttggtggcgtcagcatcaacccacagatgatg
aagctgcgcagcggcgttgacgtgctggtcgcgaccccgggccgtctgctggatctggaa
catcagaacgcgctggacctgtctaaggttgagatcctggtgctggacgaagcggaccgc
atgctggatatgggctttatccacgatatccgtcgcgtgctggccaagctgccggccaaa
cgtcagaacctgctgttctccgccaccttctctgatgagatcaaagggctggcggaaaaa
ctgctgcacaaccctgagcaggtggaagtggctcgccgcaacaccgcctccgagcaggtg
acgcagcacgttcacttcgtcgacaagaagcgcaagcgggaactgctgtcgctgatgatc
ggcaagggcaactggcagcaggtgctggtgttcacccgtaccaagcacggcgctaatcac
ctggccgagcagctgaacaaagacggtatcaccgccgcggcgatccacggtaacaagagc
cagggcgcgcgtacccgtgcgctgagcgactttaaatccggcggcattcgcgtgctggtg
gcaaccgacatcgctgcccgtggtatcgatatcgaagagctgccgcacgtggtcaacttt
gaactgccaaacgtgccggaagattacgtgcaccgtattggccgtaccggccgtgcggcc
gccgtcggtgaagcgctgtcgctggtctgcgtggacgagcacaagctgctgcgcgacatc
gaacgcgtgctgaagcgtgaagtgccgcgtatggcgctggaaggcttcgagccggaccca
agcatcaaagccgagccgatcgttaacggccgtcagcagcagcgcggtggcggcggcggt
ggacgcggtcgcggtcagggccagggtcaggggcgcggtaacggcggcggcgagcgcagc
ggtaaccggggtggcaacagcgctgctgccggtaccggtaacggcggtgagcgtcgtcag
gccagcggcgagcgtcgtcagggcaacggcggcaacgccggtaacggttctgctgccgca
cgcggcggtcgttcggaaggcggcagcggtgcaccgcgcgtcaaccagacccgccagcgt
cgtggtaactcctcgaacaacggctaa
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