Erwinia sorbitola: GN242_02500
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Entry
GN242_02500 CDS
T06366
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
erwi
Erwinia sorbitola
Pathway
erwi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
erwi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GN242_02500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
erwi03019
]
GN242_02500
03009 Ribosome biogenesis [BR:
erwi03009
]
GN242_02500
Enzymes [BR:
erwi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GN242_02500
Messenger RNA biogenesis [BR:
erwi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GN242_02500
Ribosome biogenesis [BR:
erwi03009
]
Prokaryotic type
rRNA helicases
GN242_02500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
DRTGG
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QGU86169
UniProt:
A0A6I6EMA6
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All DBs
Position
541032..542978
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AA seq
648 aa
AA seq
DB search
MTDIQTTFADLGLNAELLESLTGMGYVKPSPIQLECIPHLLAGRDVLGMAQTGSGKTAAF
SLPLLHNIDPTVKAPQILVLAPTRELAVQVAEAMTEFAKHMRGLNVVALYGGQRYDVQLR
ALRQGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPDN
HQTALFSATMPEAIRRITKRFMKDPQEVRIQSSMTTRPDISQSYWTAYGRKTDALTRFLE
SEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA
TDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE
RTMKLTIPEVELPNAELLGERRLAKFAAKVQQQLESSDLEQYRALLAKMQPQEEELDIET
LAAALLKMAQGERPLIVPADAPQRPRSQFRDRDDRREGGRGDRPERGPREPREARGEAGD
RPRRERRDVGDMEVYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIELP
KGMPGEVLQHFTRTRILNKPMNMQLIGDAQPRSNDRGGERRPGGPARGGFGSGAGREGGA
PRGGAEGGRRFSNDRGGERRPGGFNRDGATSRGPRTEGGAAPTRRRDA
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgactgatatccaaactacttttgctgaccttggcctgaacgccgaactccttgaatca
ctgaccggcatgggctacgtaaagccttccccaatccagcttgagtgtattcctcatctg
ctggcgggccgtgatgtgctgggtatggcgcagaccgggagtggcaaaaccgcagcattc
tcgctgccgttattacacaacattgatcctactgttaaagcaccgcagattctggtgctg
gcacctacccgcgaactggcggttcaggttgctgaagcgatgaccgaattcgctaaacac
atgcgcggtcttaacgtggtggccctttacggtggccagcgttacgacgtgcagctgcgc
gctctgcgtcaggggccacaggttgttgtgggcacacctggccgtctgcttgaccacctg
aaacgcggcacgttagatctttctaacctgcgcggcctggtgctggatgaagccgatgaa
atgctgcgtatgggcttcatcgaagacgttgaaactatcatggctcagatcccagacaat
catcagactgctctgttctctgccaccatgccagaagcgattcgtcgtattactaaacgc
tttatgaaagatccgcaggaagtgcgtatccagtcaagcatgactacacgtcctgacatc
agccagagctactggactgcctatggccgtaaaactgatgcactgactcgcttcttggaa
tcagaagactttgatgcggcgatcatcttcgtacgtaccaaaaatgccacgctggaagtt
gctgaagcgctggagcgcagcggttataacagtgctgcactgaacggcgatatgaaccag
gcactgcgtgagcagactctggagcgtctgaaagatggtcgtctggacatcctgattgct
accgacgttgctgctcgtggtctggacgttgagcgtatcagcctggttgttaactatgac
atcccgatggacgcagaatcttacgttcaccgtatcggccgtaccggtcgtgctggtcgt
gctggccgcgctctgctgttcgttgagaaccgtgagcgtcgtctgctgcgtaacatcgag
cgcaccatgaagctgactattcctgaagtggaactgcctaacgcagaactgctgggtgag
cgtcgtctggctaagtttgccgctaaagttcagcagcagctggaaagcagcgatctggag
cagtaccgtgctctgctggctaagatgcagcctcaggaagaagagctggatatcgaaact
ctggccgcagctctgctgaaaatggcccagggcgaacgtccactgatcgttcctgccgat
gctccacagcgtcctcgcagccagttccgtgaccgcgatgatcgccgtgaaggcggtcgt
ggtgaccgtccagagcgtggccctcgtgaaccacgcgaagcacgtggcgaagcgggcgac
cgtccacgtcgtgaacgtcgtgacgttggcgatatggaagtttaccgcatcgaagttggc
cgtgatgacggtgttgaagttcgtcatatcgttggtgctatcgctaacgaaggcgacatc
agcagccgctacattggtaacatcaagctgttcggtactcactcaactatcgaactgcca
aaaggcatgccgggcgaagttctgcaacacttcactcgtacgcgtattctgaataaacca
atgaatatgcagctgattggtgatgcacagccgcgcagcaatgaccgtggcggcgaacgt
cgtccgggcggccctgcacgtggtggtttcggttctggcgcaggccgtgaaggcggagct
ccacgcggtggtgctgaaggcggtcgtcgcttcagcaatgaccgtggcggtgagcgtcgt
ccaggcggtttcaaccgtgatggcgctaccagccgtggccctcgcactgaaggcggcgca
gcaccaacccgtcgtcgtgatgcgtaa
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