Erwinia sorbitola: GN242_02835
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Entry
GN242_02835 CDS
T06366
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
erwi
Erwinia sorbitola
Pathway
erwi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
erwi00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
GN242_02835 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
erwi03021
]
GN242_02835 (rpoD)
Transcription machinery [BR:
erwi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GN242_02835 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DNA_ligase_A_N
HAP1_N
PAC1
Motif
Other DBs
NCBI-ProteinID:
QGU86227
UniProt:
A0A6I6E906
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All DBs
Position
complement(620842..622680)
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AA seq
612 aa
AA seq
DB search
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVVEEAP
DADDLMLNENNNDTDEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEEGINQVQCSVAEYPEAITYLLEQYDRVEAGEARLSDLITGFVDPNAEAEIAPTA
THVGSELSAEERDDEEEEDEEDDSSDDDNSIDPELAREKFNDLRVQYEITRTVIKAKSRS
HADAIAEIQNLSDVFKQFRLVPKQFDFLVNSMRTMMDRVRTQERLILKLCVEICKMPKKN
FITLFTGNETSETWFKAALAMNKPWSEKLNDVADDVYRSLTRLQQIEAETGLTIEQVKDI
NRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY
RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPE
ELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLR
SATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHP
SRSEVLRSFLDD
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagcttaagctacttgtcacccgtggtaaggagcaaggc
tatctgacctatgccgaggtcaatgaccatctgccggaagatatcgtcgactccgatcag
atcgaagacatcattcagatgatcaacgacatgggcatccaggtagtggaagaagcgcct
gatgccgatgatctgatgctgaatgagaacaacaacgatacggacgaagacgctgccgaa
gcagctgctcaggtattatccagcgtagaatctgaaatcggacgtacaactgacccggtg
cgcatgtacatgcgtgaaatgggtacagttgaactgctgacgcgcgaaggcgagatcgat
attgcgaagcgtatcgaagagggtattaatcaggttcagtgttccgtagctgaatacccg
gaagccatcacctatctgcttgaacagtatgatcgtgttgaagcaggcgaagcgcgcctg
tccgacctgatcaccggctttgtcgatccaaatgctgaagctgagatcgcaccaactgct
actcacgttggttcagaactctctgctgaagagcgcgacgacgaagaagaagaagatgaa
gaagacgacagctccgacgatgacaacagcatcgatccggaactggcgcgtgagaaattc
aacgatctgcgcgtacagtacgaaatcacccgtaccgtgattaaggctaaaagccgcagc
cacgccgacgccatcgctgaaattcagaatctttctgacgtatttaaacagttccgcctg
gtgccgaagcagttcgacttcctggtgaacagcatgcgtaccatgatggatcgcgttcgt
actcaagagcgcctgatcctgaagctgtgtgttgaaatctgtaaaatgccgaagaagaac
ttcatcactctgtttaccggcaatgaaaccagcgagacatggttcaaagctgcgctggcg
atgaataagccatggtctgagaagctgaacgacgtcgccgacgatgtttatcgtagcctg
accagactgcaacagattgaagcagaaactggcctgacgattgaacaggttaaagatatc
aaccgtcgtatgtccatcggcgaagcgaaagcgcgccgtgcgaagaaagagatggttgaa
gctaacctgcgtttggttatctccatcgctaaaaagtacaccaaccgtggcttgcagttc
ctggatctgattcaggaaggcaacatcggtctgatgaaagcggtagataaatttgaatac
cgccgtggttataagttctcaacttacgccacatggtggatccgtcaggcaattactcgc
tctatcgcggatcaggcacgtaccatccgtattccggtgcatatgattgagacgattaac
aaactcaaccgtatttcgcgccagatgctgcaagagatgggccgtgagccaacgccggaa
gagctggcagagcgtatgctgatgccagaagataaaatccgtaaggtgctgaaaatcgct
aaagagccgatctctatggagacgccgattggtgatgatgaagattcacatctgggtgat
tttatcgaagacaccacgctggagctgccgctggactctgctacttctgagagcctgcgt
tcagcaacccatgacgtgctggccggtctgaccgctcgtgaagcgaaagtgctgcgtatg
cgcttcggtatcgatatgaataccgatcacacactggaagaagttggcaaacagttcgac
gtaacgcgtgagcgtattcgtcagattgaagcgaaggcgctgcgtaaactgcgtcaccca
agccgctctgaagtgttgcgcagtttcctcgacgattaa
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