Erwinia sorbitola: GN242_10665
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Entry
GN242_10665 CDS
T06366
Symbol
pdeR
Name
(GenBank) cyclic di-GMP phosphodiesterase
KO
K14051
c-di-GMP phosphodiesterase Gmr [EC:
3.1.4.52
]
Organism
erwi
Erwinia sorbitola
Pathway
erwi02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
erwi00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
GN242_10665 (pdeR)
Enzymes [BR:
erwi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
GN242_10665 (pdeR)
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GFIT
Motif
Pfam:
EAL
GGDEF
PAS_9
PAS
PAS_4
GGDEF_2
PAS_10
DUF3612
PBP-Tp47_c
Motif
Other DBs
NCBI-ProteinID:
QGU87655
UniProt:
A0A6I6EI60
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All DBs
Position
2394592..2396583
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AA seq
663 aa
AA seq
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MTDEQGQALLYAYFGTSSPHWRLSSDSDALQFTQDEGGETNIAVPLTPPQASLLRSMKVI
TTSVNLTITLYGDTLSMHLVGRKVSQNAWAGTASAWGDTSSVARDLASGLSFAEQVVSEA
NSVIVIVDHQGNIQRFNRLCEEYTGLKEHEVIGRNVFQLFMTRQEAAASRRNISMFFREG
SSYEVERWIKTKKGQRLFLFRNKFVHSGSGKNEIYLICSGTDITEERRAQERLRVLANTD
TITGLPNRNAINHEITEALDKRVDQQIGVVYLDLDNFKKVNDAYGHMFGDQLLQAVSLAI
LSCLDKHQTLARLGGDEFIVLAEDTSQAALEAMSSRILERLKKPFRIGLIEVYSGCSVGI
ALAPQHGEDRESLIRNADTAMYTAKENGRGKFCIFSAEMNHRVFEYLWLDTNLRKALEHH
QLVLHYQPKLNSDGSVSSVEALVRWMSPERGLIPPDSFISYAEESGLIIPLGRWVMLTVL
EQILRWRKKGIDLRVAVNVSPRQLVDQSIYTDLKLALDDAGLKTCPIDIELTESCLIENE
QLALELMEQFQKLGAAVHLDDFGTGYSSLSQLARVPIDAIKLDQSFIRGVNEQEVSQSLV
RAIVAVAKALNLQVIAEGIETVEEAEFVMASGVDTRQGFLYAKPMPADEIEHWLTRHHAI
TSP
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatgaacaagggcaagcgctattgtatgcgtatttcggtaccagcagccctcat
tggcgtttatcctccgatagtgatgccttgcaatttactcaagatgaaggcggcgaaact
aatatcgccgtcccgttaacaccaccgcaggcgagcctgctccgcagtatgaaggtgatc
accaccagcgttaacctgaccattacgctctacggggatacgctatccatgcatctggtc
ggcaggaaggtttctcagaatgcctgggccggcaccgcttcagcatggggagacacctct
tccgtagcgcgagatctggcatctggcctgtcgtttgctgaacaggtggtatctgaagcc
aattctgtgattgttatcgtcgatcatcagggcaatatccagcgttttaaccgcctctgc
gaagagtacaccggcctgaaagagcatgaagttatcggccgcaatgtttttcagctattt
atgacgcgccaggaagccgccgcatcaaggcgtaatatcagcatgtttttccgcgaaggc
agctcctatgaagttgagcgctggattaaaactaaaaaaggtcaacgtcttttcctgttc
cgcaataagtttgtccatagtggcagcggcaaaaacgagatatacctgatctgctccggt
acagatattaccgaagagcgccgcgctcaggagcggctgcgcgtactggcaaacaccgat
actattaccggactgccaaatcgcaatgcgattaaccacgaaatcaccgaggcgctggat
aaacgcgtcgaccagcagattggcgtggtttacctcgatctggacaatttcaaaaaagtg
aacgatgcctacgggcatatgtttggcgaccagctgttgcaggcggtttctcttgctatt
ttaagctgcctggacaaacaccaaacgctggctcgcctgggtggcgacgagtttatcgtg
ctggctgaagacaccagtcaggcagcactggaggcaatgtcttcacgtattcttgagcga
ctaaaaaaaccgttccgtattggtttgatcgaggtctattccgggtgctcagtgggtatt
gccctcgccccacagcatggtgaagatcgggaaagtttgatccgtaatgccgataccgcg
atgtacacggcgaaagagaatgggcgtggtaaattctgcatcttctccgccgagatgaat
catcgcgtgtttgaatatctctggctcgataccaatctacgtaaggcgcttgagcatcac
cagctggtgctccactatcagccaaaactgaattcggatggttcggtcagtagcgttgaa
gcgctggtacgctggatgtctcctgagcgcggattgatcccgcctgacagcttcatttct
tatgctgaagagtctggtttaattattccccttggccgctgggtgatgctgaccgtactg
gagcaaattctgcgctggcgcaaaaaaggaattgatctgcgggttgcggttaatgtttca
ccgcgccagctcgttgaccaaagtatttataccgacctgaaactggcgctggacgacgcc
gggctgaagacctgcccgattgatattgagctgacggaaagctgtctgattgaaaatgaa
cagctggcgctggaactgatggagcagttccagaaactgggagcggcggtacatctggat
gattttggtaccggatactcttcgttatcgcagttagctcgcgttccgattgatgcaatt
aaactcgaccagagctttatccgcggtgttaatgagcaggaagtctcgcaatcactggtc
agagccattgttgcggtagctaaggcgctcaatttgcaggtgatcgcagaagggattgag
acagttgaagaagctgagtttgttatggctagcggcgtagatacacgccagggattttta
tatgcaaagccaatgcccgccgatgagatcgagcactggcttacgcggcatcatgccatt
actagtccctga
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