Erwinia sorbitola: GN242_12655
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Entry
GN242_12655 CDS
T06366
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
erwi
Erwinia sorbitola
Pathway
erwi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
erwi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GN242_12655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
erwi03019
]
GN242_12655
03009 Ribosome biogenesis [BR:
erwi03009
]
GN242_12655
Enzymes [BR:
erwi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
GN242_12655
Messenger RNA biogenesis [BR:
erwi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GN242_12655
Ribosome biogenesis [BR:
erwi03009
]
Prokaryotic type
rRNA processing factors
GN242_12655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
QGU88025
UniProt:
A0A6I6EJ49
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All DBs
Position
2820001..2823552
Genome browser
AA seq
1183 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEISREYFPANYNSHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLELPDGMGLIVRTAGVGKSADAL
QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLS
LSILRLIEEEALKENTKEVHAIVPVQVASYLLNEKREAVSAIEKRQGGVRAIIVPNDNMQ
TPHYSVLRVRSGEETQTLSYHLPKLHEAEMALPSEEEHAERKRPEQPALAAFVMPDAPPA
PQEEVAEVVVAKPVAQPEAKSPAAATQPGLVSRFLSGLKKLFATEEKPAEQPQPAVVEEK
AAEAAAPRSERRNNRRQNNNRRDRNGERGERYGDRNADRSDRNGERNDRSGERNERNTDR
NDRNGERAERAPRERNTEAPAREPREDNRRNNNNKRNAPQTDARSERMVPDEFERSETSQ
PRQPRQDRQRRRPGQNQEDKRPVVQEEKIAEPILETAENLEVQEENVQVMPRRKPRQLNQ
KVRIETAEQTAARSFDTEEVAPSAPAPVVNESVAESDDNDDRDGNNMPRRSRRSPRHLRV
SGQRRRRYRDERYPSQSPMPLPSAAASPEMASGKVWITYPVAQTSDHETHEEPGHSVVPA
YGHADIETPEVTTAAAVAAVETASVVETPEIAVTAPVAETPVAAAPVVEAPVVDTTAAEA
PATVPAESVQHAEPQPESLPEITPVIAEETAAIDAPVNEEPAVISTADEVIAQETAAEAV
SAEDVQPAAATAAVDAVADIVEEAQQTEPQQQAAEVAQAAPVEVSPEVEQQVAEVLHAPE
TTAAQQPVATSEPHAPVPARDEPVIAAPAAAVAAPAVTGSVAPAQDSAAHHATAPMTKAP
APAYQPEAPRQSDWVRPDFNFDGKGSAGGHAATHQATAPATRP
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgataaacgcgactcaacaggaagagttgcgtgttgccctcgtggac
ggacaacgtctgtatgacctggatattgaaagtcctggtcacgaacagaaaaaagccaac
atctacaaaggaaagatcactcgcattgaacctagcttagaagcggcatttgttgattac
ggcgctgaacggcacggtttcctacctctgaaagaaatttcccgcgaatacttccctgct
aattacaactctcacggtcgtccaaatattaaggatgtactgcgtgaaggtcaggaagtc
attgttcagatcgataaagaagaacgtggtaataaaggcgcagccctcaccacgtttatc
agtctggcgggaagttatctggttttaatgcctaataacccacgagcaggtggtatttca
cgccgtatcgaaggggatgaccgcactgaactgaaagaagcactctcctcactggaactg
cctgatggcatgggcctgattgtacgcaccgctggtgtgggtaaatcagcagatgcattg
cagtgggatctcagcttccgcctgaagcactgggaagcgattaaaaaagccgctgaaagc
cgccctgctccattcctgatccatcaggaaagcaacgttatcgtgcgcgccttccgtgac
tatctgcgccaggatatcggcgaaatccttatcgacaacccgaaagtgctcgaactggct
cgccagcatatcgccgccctcggtcgtccggatttcagcagcaaaattaaattgtacacc
ggtgaaattccgctgttcagccactaccagatcgaatcgcagattgaatctgcattccag
cgtgaagtgcgtctgccttccggcggctcgattgttatcgacaccaccgaagcgctgacc
gccatcgatatcaactccgcacgcgctacccgcggcggtgacatcgaagagaccgccttt
aataccaacctggaagcggctgatgaaatcgcacgccagctgcgtctgcgtgacctcggc
ggcctgattgttatcgactttatcgacatgacccctgttcgccaccagcgcgcggtagaa
aaccgactgcgcgaagcagtgcgtcaggatcgtgcacgtatccagatcagccatatttct
cgctttggcctgctggagatgtcgcgtcagcgcctcagcccgtcactgggtgaatccagc
catcacgtctgcccgcgctgtagcggtaccggcaccatccgtgataacgaatcgctgtca
ctctctattctgcgtctgattgaagaagaagcgctgaaagagaacaccaaagaagttcat
gccatcgtgccagttcaggttgcttcctacctgctgaacgagaagcgtgaagccgtcagc
gcgattgaaaaacgtcagggtggcgtacgcgctattatcgtacctaacgataatatgcag
acaccgcactactcagtcctgcgtgtgcgcagcggtgaagaaactcagaccctgagctat
catctgccgaagctgcatgaagctgaaatggctctgccttctgaagaagagcacgcagag
cgtaagcgtcctgaacagcctgccctcgccgcctttgttatgccagatgcaccaccggca
cctcaggaagaagtggcagaagttgttgtcgccaaacctgttgcacaacctgaagcgaaa
tcccctgctgctgcaacccagccaggtctggttagccgcttcttaagcgggctgaaaaaa
ctgttcgctacggaagagaaaccagctgaacagccacaaccagctgtggttgaagaaaaa
gctgccgaagccgctgcaccgcgtagcgaacgtcgtaacaaccgccgccagaataacaac
cgtcgcgatcgtaacggagagcgtggtgaacgttatggcgaccgtaatgcagatcgtagc
gaccgcaatggcgaacgtaacgaccgcagcggtgagcgcaacgaacgcaatactgaccgc
aatgaccgcaacggtgagcgcgccgaacgtgcaccacgtgaacgcaacaccgaagcgcca
gcgcgtgagcctcgcgaggacaaccgtcgtaacaacaataacaaacgcaacgcaccacag
accgacgcccgtagcgagcgtatggtaccggacgaatttgagcgcagcgaaacttcgcag
ccgcgtcagcctcgtcaggatcgccagcgtcgtcgtcctggtcagaaccaggaagataaa
cgcccggtagtgcaggaagagaagatcgcagagccgatcctcgaaaccgcagaaaatctg
gaagtgcaggaagagaacgtacaggtgatgccgcgccgtaaaccgcgccagctgaaccag
aaagtgcgtatcgaaaccgctgaacagacagcagcgcgctcgtttgatacagaagaagtg
gcaccttcggcacctgcgccggtggttaacgaatctgtcgccgagtctgacgataacgac
gatcgcgatggtaacaatatgccacgtcgttcacgtcgctccccgcgccacctgcgcgtg
agtggtcagcgtcgccgccgttaccgtgatgagcgttatccttcacagtccccaatgccg
ctgccgagcgctgctgcatcgccagaaatggcatcgggtaaagtgtggattacttatccg
gttgcgcagaccagcgatcatgaaactcatgaggaacctggccattcagtcgttcctgcc
tatggtcatgccgatatcgagacaccggaagtgacaacggctgctgctgttgccgctgtt
gaaaccgccagcgtggtagaaactccggaaatcgccgttaccgcaccagtggctgaaacg
cctgttgcagcagcgcctgttgtggaagctcctgtagttgatactacagcagcagaagct
ccggcaaccgtaccggctgaatctgtgcagcacgccgaaccgcagccagaaagtctgcca
gaaatcacgccagtgattgctgaagagacggcagctatcgacgcaccggtcaatgaagag
ccagctgttatctctaccgctgatgaagttatcgcgcaggagaccgcagcagaagccgtt
tcagcagaagatgttcagccagcagctgcaaccgcagcggttgatgctgttgctgatatc
gtggaagaagctcaacagactgaacctcagcagcaggctgcggaagttgctcaggcggcg
cctgttgaagtcagccctgaagttgagcagcaggttgctgaagtgctgcatgccccagaa
accactgccgcccagcaacctgtggcgaccagcgaaccgcatgctccggtgcctgctcgt
gatgagcctgttatcgctgcaccagctgctgctgtagctgccccggcggttaccggatct
gtggctcctgcgcaggacagcgccgcgcatcacgccactgcgccgatgacgaaagcaccg
gctccggcttatcagccagaagcaccacgtcagagcgactgggtacgtccggactttaac
tttgatggtaagggttcagcaggcggtcatgctgctacccaccaggcgactgctccggca
actcgcccgtaa
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