Erwinia sorbitola: GN242_14235
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Entry
GN242_14235 CDS
T06366
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
erwi
Erwinia sorbitola
Pathway
erwi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
erwi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GN242_14235 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
erwi03019
]
GN242_14235 (rhlE)
Enzymes [BR:
erwi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GN242_14235 (rhlE)
Messenger RNA biogenesis [BR:
erwi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GN242_14235 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
Utp25_C
Spectrin_6
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QGU88314
UniProt:
A0A6I6EEL2
LinkDB
All DBs
Position
complement(3172625..3174061)
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AA seq
478 aa
AA seq
DB search
MSFDSLGLNADILRAVAEQGYNEPTPIQRQAIPVVLAGRDLMASAQTGTGKTAGFTLPLL
QLLSSNNPHPKGRRPVRALILTPTRELAAQVGENVQEYSKYLDIRSLVVFGGVSINPQMM
KLRGGVDVLVATPGRLLDLEHQNALDLSQVEILVLDEADRMLDMGFIHDIRRVLAKLPAK
RQNLLFSATFSDEIKTLAEKLLHNPEEVSVARRNTASEQVTQHVHMVDKKRKRELLSFLI
GRDNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALSDFKEGKIRVLV
ATDIAARGIDIEELPHVVNYELPNVPEDYVHRIGRTGRAAAVGEALSLVCVDELKLLRDI
ERVLKREIPRMAIEGYEPDPSIKAEPIINGRQQQRGGAGGGRGRPGQGQGQRSNGAGDRS
ASGSRTGNGGGNGGERRQGNANGSSTGAARGARPEGGNGGAPRVNKTRPRRSNPANNG
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgattctctcggccttaatgccgatattttgcgcgctgttgcagaacagggc
tataacgagccgacgccaattcagcgccaggctatcccggtagtactggctggtcgcgac
ctgatggccagcgctcagaccggtaccggtaaaacagcaggttttaccctgccgctgctg
caactgttaagcagcaataacccgcaccctaagggccgtcgcccggtgcgcgcactgatt
ttgaccccaacccgcgaactggcggctcaggtgggcgaaaacgtgcaggaatacagtaag
tatcttgatatacgctcgctggttgtgttcggcggcgttagcattaacccgcagatgatg
aaactgcgcggtggtgtggatgtactggtagcgaccccggggcgtctgctggatctggag
catcagaatgctcttgacctgtctcaggtggaaatcctggtgctggatgaagccgaccgt
atgctcgatatgggctttattcacgatatccgtcgcgtgctggcaaaactgcctgcaaag
cgtcagaacctgctgttctctgccactttctctgatgagatcaagaccctggcggaaaaa
ctgctgcacaacccggaagaagtttccgtggcgcgccgcaataccgcttctgagcaggtg
acgcagcatgtgcatatggttgataaaaaacgtaagcgcgagctgttatccttcctgatt
ggtcgtgataactggcagcaggtgttggtctttacccgtaccaagcacggcgctaaccat
ctggccgagcagctgaataaagacggcattactgccgccgctatccatggtaacaagagc
cagggcgcacgtactcgtgctctgagcgactttaaagaaggtaaaatccgcgtgctggtg
gcaacggatattgctgcccgtggtatcgacatcgaagaactgccgcacgtggtgaactac
gagctgccaaacgtgccggaagattacgtacaccgtatcggtcgtacgggtcgtgcggca
gccgttggtgaagcgctgtctctggtctgtgtggatgaactcaagctgctgcgtgatatc
gagcgcgtgcttaagcgtgagatcccacgtatggcgattgaaggctatgagcctgatcca
agcattaaagctgaacctatcatcaacggtcgccagcagcagcgcggtggagcaggcggt
ggacgcggtcgtccaggtcagggccagggccagcgtagcaatggcgcaggcgatcgcagt
gccagcggcagtcgtacaggtaatggcggcggcaacggcggtgaacgtcgtcagggcaat
gctaacggcagcagcacaggtgccgcacgcggtgcccgtcctgaaggcggtaacggtggc
gcaccacgcgtcaacaaaacccgtccacgtcgttccaacccggcgaacaacggctaa
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