Erwinia sorbitola: GN242_19760
Help
Entry
GN242_19760 CDS
T06366
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
erwi
Erwinia sorbitola
Pathway
erwi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
erwi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GN242_19760 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
erwi03021
]
GN242_19760 (rpoC)
03400 DNA repair and recombination proteins [BR:
erwi03400
]
GN242_19760 (rpoC)
Enzymes [BR:
erwi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GN242_19760 (rpoC)
Transcription machinery [BR:
erwi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GN242_19760 (rpoC)
DNA repair and recombination proteins [BR:
erwi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GN242_19760 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QGU89313
UniProt:
A0A6I6EYJ7
LinkDB
All DBs
Position
complement(4361768..4365991)
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTNLEKRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERVYRAG
LASLHARVKVRITEHEKNEQDEWVSKTSIIDTTVGRAILWMIVPKGLPFSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPEKKVEIISEAEAE
VAEIQQQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTELVINRDGVEERQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRERVL
GRVTAEDVIKPGTADILLPRNTLLHEQQCDLLEEHSVDSLKVRSVVSCETDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGTLKL
INAKSVTNSAGKLVITSRNVELKMIDEFGRTKESYKVPYGSTMAKGDGEQVAAGETVANW
DPHTMPVITEVSGFIRFTDMIDGQTITRQTDDLTGLSSLVILDSAERTAGGKDLRPALKI
VDANGNDVMIPGSDMPAQYFLPGKAIVQLEDGIKISSGDTLARVPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPIDGSDHYEEMIPKWRQLNVFE
GERVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKATIASAGSTDFLDGEQVEFSRVKIANRELEANGKIAATFARDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRKAAGETPV
APQVTADEASASLAELLNAGNLGGNNE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttacttaagtttctgaaagcgcaaactaagacagaagagtttgatgcgatc
aagatcgctctggcatcgccagatatgatccgttcatggtcttttggtgaagttaaaaag
ccggaaaccattaactaccgtacgttcaaacctgaacgtgacgggcttttctgtgcgcgt
attttcgggccagtaaaagactacgagtgcctgtgcggtaagtacaagcgcttgaaacat
cgtggcgtgatctgcgagaagtgtggcgttgaagttacacagaccaaagttcgccgtgag
cgcatgggccacattgagctggcttctccaactgcgcacatctggttcctgaaatcgttg
ccttcgcgcatcggtttgctgctggatatgccactgcgtgatatcgaacgtgttctttac
ttcgaatcttatgttgtggttgaaggcggtatgaccaacctcgaaaagcgccagatcctg
actgaagagcagtatcttgacgcgctggaagagtttggtgacgaattcgacgctaaaatg
ggtgcggaagcgatccaggctctgttgaaaaacatggatctggagcaagagtgcgagcag
ctgcgtgaagagctgaacgaaactaactccgaaaccaagcgtaaaaaactgaccaagcgt
atcaagctgctggaagcgttcgtacagtctggtaataaaccagagtggatgatcctgacc
gtgctgcctgtactgccaccggatttgcgtcctctggtaccgctggacggcggtcgtttc
gctacctcggatctgaacgatctgtatcgtcgcgtaatcaaccgtaacaaccgtctgaaa
cgcctgctggatctggctgcgccagatatcatcgtacgtaacgaaaaacgtatgttgcag
gaagcggtcgatgcgctgttagataacggccgtcgcggtcgtgcgatcaccggttctaac
aagcgtcctctgaaatctttggccgatatgatcaaaggtaaacagggtcgtttccgtcag
aacttgctgggtaaacgtgtcgactactctggtcgttcggttatcaccgtaggcccatac
ctgcgcctgcatcagtgtggtctgccgaagaaaatggcactggagctgttcaaaccgttt
atctacggcaagctggaactgcgtggtcttgcaaccaccattaaagccgctaagaaaatg
gttgagcgtgaagaagctgtcgtctgggatatcttggatgaagtgatccgcgaacacccg
gttctgctgaaccgtgctccaacactgcaccgtctgggcattcaggcgtttgagccagta
ctgatcgaaggtaaagcgattcagcttcacccgctggtctgtgcggcatacaacgccgac
ttcgatggtgaccagatggcagttcacgtaccgctgacgctggaagcccagctggaagcg
cgtgcgctgatgatgtctaccaacaacatcctgtctcctgcgaacggtgagcctatcatt
gttccttctcaggacgttgtactgggtctgtattacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgactggcccgaaagaagctgaacgcgtttatcgcgccggc
ctcgcatctctgcacgctcgcgtaaaagtgcgtatcactgaacacgagaaaaacgagcag
gatgagtgggtttctaaaaccagcatcattgataccactgttggtcgtgccatcctgtgg
atgatcgtaccaaaaggtctgcctttctctatcgttaaccaggcgctgggcaaaaaagct
atctccaagatgctgaacacctgttaccgcatcctgggcctgaagccgaccgttatcttt
gctgaccagactatgtacaccggctttgcctatgcggcacgctctggtgcgtctgttggt
atcgacgacatggttattccagagaagaaagttgaaatcatctctgaagcggaagccgaa
gttgctgaaattcagcagcagttccagtcaggtctggttaccgctggcgaacgctataac
aaagtgatcgatatctgggctgcggccaacgaacgcgttgctaaagcgatgatggaaaac
ctctctaccgaactcgtgatcaaccgcgatggtgtggaagagcgtcaggtttccttcaac
agcatctttatgatggccgactccggtgctcgtggttctgcggcgcagattcgtcagctg
gcaggtatgcgtggtctgatggctaagccagatggctccatcatcgagacgccaattacc
gcaaacttccgtgaaggtctgaacgtactccagtacttcatctccacgcacggtgcgcgt
aaaggtcttgcggataccgcactgaaaacagctaactccggttatctgactcgtcgtctg
gttgacgtcgcgcaggatctggtggtgactgaagatgactgtggtacgcacgaaggcatc
atgatgactccggtcatcgaaggtggcgacgtgaaagagccgctgcgtgagcgtgtactg
ggtcgtgtgaccgcagaagacgttatcaagccgggtactgctgatatccttctgccacgt
aacaccctgctgcacgaacagcagtgtgacctgttggaagaacactctgttgacagcctg
aaagttcgttccgtagtaagctgcgaaactgacttcggtgtgtgtgcacactgctacggt
cgcgacctggcacgtggtcacatcatcaacaaaggtgaggctatcggcgttatcgcagca
cagtccatcggtgagccaggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggctgctgaatcgagcattcaggtcaagaacaaaggtacgttgaaactg
atcaacgccaagtcggtaacaaactccgctggcaaactggtgatcacttctcgtaacgtt
gaactgaaaatgatcgacgaatttggtcgtaccaaagagagctataaagttccttacggt
tcaaccatggcgaaaggtgacggtgagcaggttgcagcgggcgagaccgtagcaaactgg
gatccacacaccatgccggtaatcaccgaagtgagcggtttcattcgcttcactgacatg
attgacggtcagaccattacccgccagacagatgaccttaccggtctttcttctctggtc
attctggacagtgcagaacgtactgccggtggtaaagatctgcgcccagcgctgaaaatc
gttgatgctaacggcaatgatgtgatgatccctggctctgatatgcctgcccagtacttc
ttaccgggtaaagcaatcgtccagctggaagatggcatcaagatcagttctggtgatacc
ctggcgcgtgttcctcaggaatcaggcggtaccaaggatattaccggtggtctgccacgc
gttgctgacctgttcgaagcccgtcgtccgaaagagccggcaatcctggctgagatcagc
ggcatcatttccttcggtaaagaaaccaaagggaaacgtcgtctggtgatcacgccaatc
gacggtagcgatcattacgaagagatgattccgaaatggcgtcagctgaacgtgttcgaa
ggtgaacgcgtggagcgcggtgacgtggtttccgatggcccagagtctccacatgacatt
ctgcgtctgcgtggcgtgcatgcggtgacccgttatatcactaacgaagtgcaggaagtt
taccgtctgcaaggcgttaagattaacgataagcacatcgaagtcatcgttcgtcagatg
ctgcgtaaagctaccatcgccagcgcgggaagcactgacttcctcgacggtgagcaggtt
gagttctcacgcgttaagatcgctaaccgcgaactggaagctaacggcaaaatcgctgca
acatttgcacgcgacctgctgggtatcaccaaagcttccctggcaaccgagtcgtttatc
tctgcggcatcgttccaggaaacaacgcgcgtactgaccgaagcagctgttgcgggcaaa
cgcgacgaactgcgcggcctgaaagagaacgtaatcgttggccgtctgatcccagccggt
actggttatgcctaccatcaggatcgtatgcgtcgtaaagcagcaggcgaaacgccagtt
gcaccgcaggttactgcggacgaagcttctgcaagcctggctgagttgctgaatgctggc
aaccttggcggcaacaacgagtaa
DBGET
integrated database retrieval system
