Erwinia sorbitola: GN242_20200
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Entry
GN242_20200 CDS
T06366
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
erwi
Erwinia sorbitola
Pathway
erwi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
erwi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GN242_20200 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
erwi03021
]
GN242_20200 (rho)
03019 Messenger RNA biogenesis [BR:
erwi03019
]
GN242_20200 (rho)
Transcription machinery [BR:
erwi03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
GN242_20200 (rho)
Messenger RNA biogenesis [BR:
erwi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
GN242_20200 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_22
AAA_25
OB_RNB
S1CSD-TOTE-2
AAA
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
QGU89382
UniProt:
A0A6I6EXK6
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All DBs
Position
complement(4452851..4454110)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSDLITLGENMGLENLARLRKQDIIFAILKQHAKSGEDIFGDGVLEILQD
GFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDSISGKIRPPKEGERYFALLKVNEVN
YDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLAAPIGRGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLARKIAEKRVFPAIDY
NRSGTRKEELLTTSEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDEFFDMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaaaaatacgccggtttcagacctgattaccctcggcgaaaat
atggggctggaaaacctggcgcgtttgcgcaaacaggacataatcttcgccatccttaag
caacacgctaaaagtggcgaagacatcttcggcgacggcgtactcgagatattgcaggat
ggatttggtttcctccgctcaggagacagctcctacctcgccggtcccgatgatatctac
gtttcccccagccaaatccgccgcttcaacctccgcacaggtgactccatctctggcaag
attcgcccgccaaaagaaggtgagcgttactttgccctgctgaaagttaatgaagttaac
tacgacaaaccggaaaatgcccgtaataaaatcctgtttgaaaacttaacgccgctgcat
gccaactctcgtctgcgcatggagcgtggtaacggttctaccgaagatctgaccgcccgc
gtacttgatctggctgcgccgatcggtcgtggtcagcgtggtctgattgtggcgcctccg
aaagccggtaaaaccatgctgctgcaaaacattgcgcagagcatcgcttacaaccatcca
gactgcgtgttgatggtattgctgattgacgaacgtccggaagaagtcaccgagatgcag
cgtctggttaaaggtgaagttattgcttctaccttcgacgaaccagcatcccgtcacgtt
caggttgctgagatggtaatcgagaaggccaagcgcctggtcgagcacaaaaaagacgtt
atcatcctgctggactccatcacccgcctggcgcgtgcctacaacaccgttgttcctgcc
tctggcaaggtactgaccggtggtgtggatgccaacgccctgcatcgtccgaagcgcttc
ttcggtgctgcgcgtaatgtggaagagggcggaagcctgaccattatcgccaccgcactg
gttgataccggttcgaagatggacgaagtgatctacgaagagtttaaaggtacaggcaac
atggaattgcatctggcgcgtaaaatcgctgagaaacgcgtgttccctgctattgattac
aatcgctctggtacgcgtaaagaagagctgcttaccacttccgaagagctacagaagatg
tggatcctgcgtaagattattcacccaatgggcgaaatcgacgcaatggagttcctcatc
aacaagctggcgatgacgaaaaccaatgatgaattcttcgatatgatgaagcgttcataa
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