Enterococcus rotai: ATZ35_07535
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Entry
ATZ35_07535 CDS
T10457
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
erx Enterococcus rotai
Pathway
erx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
erx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ATZ35_07535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
erx03400
]
ATZ35_07535
Enzymes [BR:
erx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ATZ35_07535
DNA repair and recombination proteins [BR:
erx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ATZ35_07535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
UB2H
RecG_dom3_C
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
ALS37020
UniProt:
A0A0U2VHB4
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All DBs
Position
1646254..1649787
Genome browser
AA seq
1177 aa
AA seq
DB search
MNIIERIGASELARDWQTQLTGNTRQLITGLAGSAKTLVMTSGFKQKNKKVVVAVPNLYY
GNQLVEDFRNILSDEEVYLFPVDEVLSAEMAFSSPEARAERVAALNFLLTDQAGIIVVPV
AGLRKYLPSKQTWGQAQLHWELGGEIELDTLAQQLVLMGYQRESLVGKPGDFSIRGSIVD
VYPLNSDYPVRAELFDIEIDSLRYFEADTQRSVGNIESVTLSPMTDLVFSKADLIHGEKQ
LTNALEKRVAIVKDAAEKDFLQDYFGQLATSWNQGIPTDTAHYYTDLLYETKTTLLDYLP
EDSLVFIDDYARILEAEREIIREENEWQVLKLEEMRVFPEQTFGLEFHEQVRKMTFATTF
FSLFQKGMGNLRFQAVHNFQYRSMQQFFGQMPLLKTEMDRWQKQDQTVVVFVPTKERSQK
VEELFRDFDIASVTAAADRLIEGKIQIVQGSLQSGFELPVEKLVTITEKEIFHTTTKKRA
RRQTVSNAERLKSYSDLKNGDYVVHANHGIGKYIGMQTLEVDGVHQDYITILYQNDDKLF
IPVTQLNLIQKFVASESKSPKVNKLGGSEWSKTKRKVTSKIEDIADDLIQLYASRESEKG
YAFPPDDAYQKEFEDAFPYSETDDQLRSTAEIKHDMEKTRPMDRLLVGDVGYGKTEVALR
AAFKAINNNKQVAFLVPTTILAQQHYETMVDRFEGFPVEVGLLSRFRTKKQQRETIEKIK
HGQVDIVVGTHRLLSQDVQFSDLGLLVIDEEQRFGVKHKERLKQLRAQVDVLTLTATPIP
RTLHMSMLGVRDLSVIETPPENRYPIQTYVMEHNPGAIREAIEREMARDGQVFYLYNRVD
TIEQKVEEIQALVPEARIAYAHGQMTEVQLENTLFDFIERQYDVLVTTTIIETGVDIPNA
NTLFVENADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKRLEAIKDFTELG
SGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVARKQGKNIQDQKTSVEI
DLGIDAYLPTSYISDERQKIEIYKRIRQLENRDMYDELEADLLDRFGEYPDEVAHLLTTG
QIKMDGDRALVETIRKRQQEITFTLSKIGTKTYNVEQIFEALSHTQLKADLAVDNEKMSI
RLKLPKDMKEAAWLQEVALFTTALRQEKYKTAIAEAE
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
ttgaacatcattgaacggattggcgcaagtgaactagcccgagattggcaaacgcagtta
acaggaaatacccgccaattgattactggcttagctggctcagccaagacattggttatg
accagtgggtttaaacaaaaaaataaaaaagtcgttgtggctgttccaaatctttattat
gggaatcagctagttgaagactttcgtaatattttatcagatgaagaagtgtacctattt
cctgtagatgaggttttatcagctgaaatggctttttcttcgccggaagctagggcagaa
agggttgcagcgctaaactttcttttgacagatcaagcgggaatcattgtggtgcctgta
gctgggttaagaaagtacttgccgagtaaacagacttggggacaagctcagcttcactgg
gaacttggtggtgaaattgagctagatactttggcgcagcaattggtcttaatgggctat
caacgtgagtctttagtggggaaacctggtgatttcagcattcgaggaagtattgtcgat
gtctatccactgaactctgactatccagttcgagcagaattgtttgatatcgagatcgat
tctttgcgttattttgaagcagatacgcagcgatcagtcggcaacattgaatctgtgacg
ctttcgccgatgacagacttagtcttttcgaaagcagatttgattcatggggaaaaacaa
ttaacgaatgctttagaaaaacgagtggcaattgtgaaagacgctgctgaaaaagacttt
ctccaagattattttggtcagttggcaacatcctggaatcaagggattcctaccgataca
gcccattactatacagaccttctatatgaaactaagacaaccttgcttgattatctacca
gaagatagcttggtctttattgatgattatgctcgtatcttagaggcagaacgtgagata
attcgtgaagaaaatgagtggcaagttcttaaattagaagaaatgcgcgtttttcctgaa
cagacttttggtttagagtttcatgagcaagtacggaaaatgacttttgcaacaaccttc
ttttcattatttcaaaaagggatgggcaatctccgttttcaagcggttcataacttccaa
tatcgctcaatgcagcaattttttggtcaaatgccattattaaaaactgaaatggatcgt
tggcaaaaacaagatcaaacggttgtggtatttgtcccaacgaaagaacggagtcaaaaa
gttgaagaactgtttcgggatttcgacattgctagcgtgactgctgcagctgaccgttta
atagaaggaaaaattcaaatcgttcaaggttccttgcagtcaggttttgaactccctgtg
gaaaaactcgtcaccatcaccgaaaaagaaattttccatacaacgaccaaaaaaagagcc
agacgtcaaactgtttctaatgcggaaagattaaaaagctatagtgatttaaaaaatggt
gactatgttgttcacgcaaaccatgggatcgggaaatatattggaatgcagaccttggaa
gtcgatggtgttcaccaagattacatcacgattttatatcaaaatgacgacaaactgttt
attcccgttacgcaactaaatctgatacagaaattcgttgcttctgaatcgaaatcgccg
aaagtgaataaattgggcggtagcgagtggagtaaaacaaaacgaaaagttacgtctaaa
atcgaagacattgcagatgatttgattcaattatatgcatccagagaatcggaaaaaggc
tatgcttttccaccagatgatgcgtatcaaaaagaatttgaagatgcatttccctatagt
gaaacagacgatcagttacgtagtacggctgaaattaaacatgatatggaaaaaacacga
ccaatggatcgtttattagttggtgatgtggggtatgggaaaacagaagtggctttacgt
gcggcttttaaagcaatcaataacaataaacaagtagcctttctagttccaaccacgatt
ttagctcagcaacattatgaaacgatggtagatcgttttgaagggtttccagtagaagtg
ggtttattaagccgctttagaacgaaaaaacaacaaagagaaactatcgaaaaaatcaaa
catggtcaagtggatattgttgtaggaacacatcgtttactttctcaagatgtgcaattc
agcgatttaggtttactagtgattgatgaagaacaacgctttggtgtaaaacataaagaa
cgtttaaaacaactgcgagcacaagttgatgttttaaccttgactgcaacaccgattcca
aggactctgcatatgtcgatgcttggcgtacgtgatttatctgttattgaaacgccaccg
gaaaatcgttatccgatccagacctatgtaatggagcataatccaggtgcgattagagaa
gcgattgaaagagaaatggcgcgagatggacaagttttttatctctataatcgtgtagat
acgattgagcaaaaagtggaagaaatccaagccttggttccagaggctagaattgcttat
gcacatgggcaaatgaccgaagttcaactagaaaataccttgtttgactttattgagcga
caatacgacgttttagtgacgactacaattattgaaacgggtgttgatattcccaatgcg
aatacgttatttgtagaaaatgctgattacatgggcttatcaaccttgtatcaattacgt
ggtagagttggccgaagcaatcgtgtggcgtatgcctattttatgtacgaacagcaaaag
attttaaacgaagttagtgaaaaacgattagaagcgatcaaagacttcactgaactagga
tcaggctttaaaattgcgatgcgcgatttatcgattcgtggtgcaggaaatttattaggc
gctcagcaacatggctttatcgattcagtcggctttgacatgtattcacaaatgctttca
gaagcagtcgcccgtaaacaagggaaaaatattcaagatcaaaaaacatctgttgagatt
gatctaggaattgacgcctatttaccaactagttatatttcggatgaacgtcaaaaaatt
gagatttacaaacgaattcgtcaacttgaaaatagagatatgtatgatgaacttgaagca
gatctgcttgatcgttttggcgaatatcccgatgaagtcgctcatttattaacgactggg
caaattaaaatggatggtgatcgcgccttagtggaaacaatccgtaagagacaacaagaa
attacgtttactttgagcaaaatcgggacgaaaacgtataatgtagaacaaatttttgaa
gcattatcacacactcagttaaaagcagatcttgctgttgacaatgaaaaaatgtcgatt
cgcttgaaactgcctaaagatatgaaagaagctgcttggctgcaggaagttgccttgttt
acgacagctttgaggcaagaaaagtataagactgccattgctgaggcagaatga
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