Enterococcus rotai: ATZ35_15820
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Entry
ATZ35_15820 CDS
T10457
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
erx Enterococcus rotai
Pathway
erx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
erx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ATZ35_15820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
erx03019
]
ATZ35_15820
03016 Transfer RNA biogenesis [BR:
erx03016
]
ATZ35_15820
Enzymes [BR:
erx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ATZ35_15820
Messenger RNA biogenesis [BR:
erx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ATZ35_15820
Transfer RNA biogenesis [BR:
erx03016
]
Prokaryotic type
tRNA degradation factors
ATZ35_15820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
S1_RRP5
Fucose_pyrophosphorylase
Motif
Other DBs
NCBI-ProteinID:
ALS38562
UniProt:
A0A0U2NTM1
LinkDB
All DBs
Position
complement(3565413..3567761)
Genome browser
AA seq
782 aa
AA seq
DB search
MTKQTIKEKILFFMENHPKKSVSMEEIAEGLQLQKSSDFKLLVQTIATMEREKLVEFNKK
GKIRLPQKNGDIEGTFRANERGFGFVTIDPEEADVYIPKEAVNFAMDGDIVVIDIVQPAD
AFSDRGAEGKVVAIKTRAITQVVGEFIAYDEKEVSETDLYGYAVPKDKKMTGLTFNIAAQ
GIKPVDGSIVIVEVTHYPEKEYPKSLEGIVKKVVGHKNDPGMDILSIVVAHGIPTSFPNE
VIAEADKVPETISETDIQGRRDLRDQLIVTIDGEDAKDLDDAVTVEKLTNGNYFLGVHIA
DVSYYVTEGSELDQEAYERGTSVYLTDRVVPMIPQRLSNGICSLNPNVPRLTMSCEMEIT
PEGHVVKHDIFQSVIQTTERMTYTAVNEILEEEKPETMKRYKKLLTMFKEMGELHQILEQ
MRENRGAISFEDREAKVLVDTEGHPHDILLRTRGVGERLIESFMLAANETVAKHFNELKL
PFIYRIHEQPKEEKMQRFFDFAAVLGILVKGTKADITPKDLQRVLEQVADKPEEAVINTM
LLRSMQQARYSEDNYGHYGLAAEYYTHFTSPIRRYPDLIVHRLIRSYAGNVSEKLKEKWE
QDLPDIADHSSRMERRAVETEREVDSMKKAEFMADKIGEEYDGIISSVTRFGLFVELPNT
IEGLIHVNNLKQDYFHFIENHMALVGERTGMTLKIGQKVKVKVDKADPETREIDFEFLEA
EEVERIEAPKQKKRQDNRRKRNSDHKNSDKKSFTQKKNKKKGKKPFYKEVAKKKKGKKQK
NK
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaacaaacaatcaaggagaaaatcctgtttttcatggaaaatcatccgaaaaaa
agtgtttccatggaagaaatcgcagaagggttgcaactacaaaaaagctcagactttaaa
ttgttagttcaaaccattgcaaccatggaacgtgaaaaattagttgaatttaacaaaaaa
ggcaagatccgtttgccacaaaaaaatggggatatcgaaggaacctttcgtgctaatgaa
cgaggatttggttttgtaacgatcgatcctgaagaagcagatgtttatattccaaaagaa
gcagttaactttgctatggatggcgatattgttgtaattgatatcgtacaaccagcagat
gctttttcagaccgcggtgctgaagggaaagttgtagcaattaaaacacgtgcaattact
caagtagtcggtgaatttatcgcctatgatgaaaaagaagtcagcgaaaccgatttatat
ggctatgcagttccaaaagacaaaaaaatgactgggctgacgtttaacatcgcagctcaa
ggaatcaaaccagttgacggtagtattgtgatcgtagaagtgacccactatccagaaaaa
gaatatccaaaaagtttagaaggaatcgtcaaaaaagtagtggggcataaaaatgatcct
ggtatggatatcttatcaatcgttgtggctcacggtattccaactagttttcctaacgaa
gtgatcgctgaagcggacaaagtgccagagactatttcagagactgatatacaaggtcgt
agagatttacgggatcaattgatcgtcacgattgatggggaagatgctaaagatttagat
gatgcagtaactgtagaaaaattaacaaacggcaattattttttaggagtgcatattgct
gatgtctcttactatgttacagaaggcagtgagttagaccaagaagcttatgaacgtggg
actagtgtgtatttaaccgaccgagtggtgccgatgatcccgcaacgtttatctaatggg
atttgctcgttgaaccctaatgtaccgagacttacaatgagttgtgagatggaaataaca
cctgaaggtcatgtcgtgaagcatgatattttccaaagcgtgatccaaacgactgaacgg
atgacttatacggcagtcaatgaaattttagaagaagaaaaacctgaaacgatgaaacgc
tataaaaaattattaaccatgtttaaagaaatgggagaacttcaccagattcttgaacaa
atgcgagaaaaccgtggcgcaatttcatttgaagatcgtgaagcaaaagttttagtggat
acagaaggtcacccacatgatatcttacttcgaacacgtggcgttggtgaacgtttgatc
gaatcatttatgcttgcagccaatgaaacggtagcaaaacatttcaatgagttgaaatta
ccatttatttatcgaatccatgaacaacctaaagaagaaaaaatgcagcgtttcttcgat
tttgccgccgtgttaggcattttagtcaaaggcacgaaggcagatattacacctaaagat
ttgcaaagagttttagaacaagttgcggataagccagaagaagctgtgatcaatacaatg
ttattgcgtagtatgcaacaagctcgttattcagaggataactatgggcactatggcttg
gctgccgagtactatactcactttacctcaccgatccgtcgttacccagacttgatcgtg
catcgattgattcgcagttatgcagggaatgtctccgaaaagctaaaagaaaaatgggaa
caggacttacctgatattgcagatcatagctcaagaatggagcgtcgagcggttgagaca
gaacgtgaagttgactcaatgaagaaagccgaatttatggcagataaaattggtgaagaa
tatgatgggatcattagctcagttactcgattcggattatttgtagaacttccgaataca
attgaagggttgatccatgtcaataacttgaaacaagattatttccattttattgaaaat
cacatggctcttgttggtgaacgaacaggaatgaccttgaaaatcggtcaaaaagtgaag
gtaaaagtagataaagccgatccagaaacaagagaaatcgattttgagtttcttgaagcg
gaagaagtagaaagaatcgaagcaccgaaacaaaagaaacgtcaggataatcgccgaaaa
cgcaattcagatcataaaaatagtgataaaaaatcatttacacaaaagaagaataagaaa
aaaggtaagaaacctttctataaagaagtagcgaaaaagaaaaaaggaaagaaacaaaag
aataaatag
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