Aurantiacibacter atlanticus: CP97_09210
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Entry
CP97_09210 CDS
T03997
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ery
Aurantiacibacter atlanticus
Pathway
ery03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ery00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CP97_09210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ery03400
]
CP97_09210
Enzymes [BR:
ery01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CP97_09210
DNA repair and recombination proteins [BR:
ery03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CP97_09210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
AAA_30
SecA_DEAD
UB2H
RecG_dom3_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AKQ42156
UniProt:
A0A0H4VH10
LinkDB
All DBs
Position
complement(1892406..1895900)
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AA seq
1164 aa
AA seq
DB search
MPDLSRFLKADQQLTLASVARGAQPLVMADLARAGSGRAVFIAADDAAMRAMVDTVHFFA
PELQVVEFPAWDCLPYDRASPAMSVSAQRLAALHRLQSGKAAHQLVVTTVNALLQRVLTP
FRIREAVREFKVGSQIGHESLAHLLRRQGYSRVDTVVDTGEFAMRGSIVDIYPSGLEAGL
RLDFFGDELESLRLFDPGTQRTTATIKDHLLLPASEALLDDDTIKRFRTRYREAFGAGAT
QDPLYEAISDGRRLAGMEHWLPMFEDKLATLFDHLDAKDTIVIDSGAIAAAEERLTDITD
YHRQRSEIAGQAKGSYRPIDPAQLYLTQEEYASAMAGWPIHKTSIFAEPEAGKIVDFGFR
SARDFTPERTQGSNVYEAAAKHFATLAKAGKRPLLAAYTQGSLSRITSILEEAGTPMQQV
ESWQEALGASAPKGGKTKPAAMVLPLDTGFANDELELVTEQDLLGDRLVRRKKRKKDADA
FLAELQALARGDLVVHVDHGIGKYIGLEPISVGKSQHDCVRLEYAGGDKLYIPVENIDVL
SRYGSSEESVPLDRLGGEAWQKRRSRLKERIQAIAGELMKVAAARALRKAPALAVDEASY
NQFLDRFQYEETEDQEQAIADVLRDLESGRPMDRLVCGDVGFGKTEVALRAAFVAAMNGQ
QVAMVAPTTLLARQHFENFRQRFDGFPLKIGRLSRLVPAAEMKSTREGLTDGTVDIVIGT
HAILSKNTQFKDLGLVIVDEEQRFGVTHKEKLKQLRADVHVLTLTATPIPRTLQMAMTGL
RELSTIKTPPVDRLAVRTYVMEWDDMVVREALLREHHRGGQSFIVVPRISDMEPLEQWMR
DTVPEVKFVAAHGQMGAGDIEERMSAFYEGKYEVLLSTTIIESGLDLPSANTMIIHRADR
FGLAQLYQLRGRVGRAKIRAYAYLTTPADMQLSEVAEKRLKVLGDLDSLGAGFQLASHDL
DIRGAGNLLGDEQSGHIREVGFELYQSMLEDAIMAAKAGDAGLEADRSHLSPQITVDAPI
MIPESYVPDLAVRMALYRRLNQADGQSEIESMAAEMIDRFGELPQATKNLIRLIEIKHQA
ITAGIAKIDVGARGTLVTFHQDSFPDPAGLIAYVERLEGTAKLRPDMKLVINRAWGDPQG
RLNGLFQLTKGLSNVVKRAAKKAA
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgcccgatctttcccgtttcctgaaagctgaccaacagctcaccctcgcctctgttgcg
cgcggggcgcagccgctggtcatggccgaccttgcccgcgccggatcgggccgcgccgtc
tttatcgccgccgatgatgcagcgatgcgcgcgatggtggatacggtgcatttcttcgcg
cccgaattgcaggtggtggaatttcccgcgtgggattgtctcccctatgaccgcgccagt
ccggcgatgtcggtcagcgcgcaaaggctggctgcgctgcaccggttgcaaagtggcaag
gcggcgcatcaactagtcgtcaccacggtcaacgccttgctccagcgtgtgctcaccccg
ttccgcattcgcgaggcggtgcgcgaattcaaggtgggaagccagatcggccacgaaagc
cttgcccatctgctgcggcggcagggctattcccgcgtcgataccgtggtggatacgggc
gaatttgccatgcgcggttccatcgtggacatttaccccagcgggcttgaggctggactg
cggctcgatttcttcggggacgaactggaaagcctgcgcctgttcgatccgggcacccag
cgcaccaccgccacgatcaaggaccacctgctcctgcccgcgagcgaagcattgctggat
gatgacacgatcaaacgcttccgcacccgctatcgcgaggcgtttggcgcaggcgcgacg
caggaccccttgtatgaagcgataagcgacgggcggcggctggcggggatggagcactgg
cttcccatgttcgaggacaagctggcaaccttgttcgatcacctcgacgccaaggatacg
atcgtcattgattcaggcgcgatcgcggcagctgaagaacggctgaccgacattacggat
taccaccgccagcgcagcgaaatcgccggacaggccaagggtagctaccgcccgatcgac
cctgcccagctttatctgacgcaagaagaatacgcttctgcgatggctggctggccgatc
cacaagacctcgatcttcgcagagccggaggctggcaagatcgtcgatttcggcttcaga
tcggcacgcgatttcacgcccgaacgcacgcaaggcagcaatgtctatgaagcggcagcg
aaacactttgccactttggccaaggcgggaaaacgcccgctgctcgctgcctacacgcaa
ggctctctcagccgcatcacctccatactggaggaagcgggaacgccgatgcagcaggtg
gaaagctggcaggaagccttgggtgcctctgcgccaaagggcgggaagacgaaacctgcc
gcaatggtgctgccgctcgacacaggctttgccaatgacgaactggaactcgtcacagag
caggatctgctgggtgacaggcttgttcgccgcaagaaacgcaagaaagatgccgacgct
ttcctcgccgaattgcaggcgctggcgcgcggcgatctggtggttcatgtcgatcacggc
atcggcaaatacatcgggctggagcctatctcggtcggcaaaagccagcatgattgcgtg
cggctggaatatgcgggcggcgacaagctgtatattccggtcgagaatatcgacgtgctc
agccgttatgggtcttcggaagaaagcgttccgctggacaggctgggcggcgaagcgtgg
cagaaacgccgttcgcgcctgaaggaacgtattcaggcaattgcaggcgaattgatgaag
gtcgccgccgcgcgcgccctgcgcaaggcccccgcccttgccgtggacgaagccagctac
aaccagtttcttgaccgtttccagtatgaggaaacggaagatcaggaacaggccatcgcc
gatgtcctgcgcgatctggaaagtggccgcccgatggacaggttggtgtgcggcgatgtc
ggatttggcaaaaccgaagtcgccttgcgcgcagctttcgtcgcggcgatgaacgggcaa
caggttgcgatggtggcccccactaccctgctggcgcgtcagcattttgaaaactttcgc
cagaggttcgacggcttcccgctcaagatcggtcggctcagccggcttgttcccgcagcc
gagatgaagtccacccgcgaagggctgaccgatggcacggtggatatcgtgatcggcacc
cacgcgatcttgtccaagaacacgcagttcaaggatcttggcctcgtgatcgtggatgaa
gaacagcgctttggcgtcacgcacaaggaaaagctgaagcagcttcgcgccgacgtgcat
gtcctcaccctcaccgccacgcccattccgcgcaccttgcaaatggcgatgacgggactg
cgcgagctttcaaccatcaagaccccgcccgtcgataggctggcggtgcggacctatgtg
atggaatgggacgatatggtggtgcgcgaggcattactgcgcgaacatcatcgcggcgga
caaagctttatcgttgtgccgcgcatttcggacatggagccgcttgaacaatggatgcgc
gatacggtgcccgaagtgaaattcgtggccgcccacggacagatgggtgcgggcgatatc
gaagaacgcatgagcgccttttacgaaggcaaatacgaagtgctgctttccaccaccatc
atcgaaagcgggctcgatctgccttctgccaataccatgatcatccatcgcgccgaccgg
ttcggtcttgcccagctctaccagctgcgcggacgcgtcggccgcgccaaaatccgcgct
tatgcctatctgaccacgcctgccgacatgcagttgagcgaagtggcggaaaagcgcctc
aaggtgctgggcgatcttgattcgctgggggcgggtttccagcttgccagccacgatctc
gacattcgcggcgcgggcaatctgctgggtgatgaacaatcgggccatattcgcgaagtc
gggttcgaactttaccagtccatgctggaagatgcgattatggcagccaaggctggcgat
gccgggctggaagcggatcgcagccatctttccccgcagatcaccgtcgatgcgccgatc
atgatccccgaaagctatgtccccgatcttgccgtgcgcatggcgctttatcgccgtctc
aatcaggccgacgggcaatccgagatcgaaagcatggcagcagaaatgatcgaccgtttc
ggtgaattgccgcaggccaccaagaacctcatccgcctgatcgaaatcaagcatcaggcc
atcaccgcaggcattgccaagatagatgtgggcgcgcgcggcacgctggtcacattccat
caagacagcttccccgatcccgcaggcctgattgcctatgtcgaaaggctggaagggacg
gccaagctgcgcccggacatgaagctggtaatcaaccgcgcatggggcgatccgcaaggc
cgcctgaatggcctgttccaattgaccaagggcctgagcaacgtggtaaaacgcgctgca
aagaaagcggcgtag
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