Aurantiacibacter atlanticus: CP97_09435
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Entry
CP97_09435 CDS
T03997
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ery
Aurantiacibacter atlanticus
Pathway
ery03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ery00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CP97_09435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ery03019
]
CP97_09435
03009 Ribosome biogenesis [BR:
ery03009
]
CP97_09435
Enzymes [BR:
ery01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CP97_09435
Messenger RNA biogenesis [BR:
ery03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CP97_09435
Ribosome biogenesis [BR:
ery03009
]
Prokaryotic type
rRNA processing factors
CP97_09435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AKQ42193
UniProt:
A0A0H4VYH3
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All DBs
Position
complement(1945021..1947798)
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AA seq
925 aa
AA seq
DB search
MATRMLIDARHPEETRVAVLKGNRIEEFDFESAEHKQIKGNIYLAKVTRVEPSLQAAFVD
FGGNRHGFLAFSEIHPDYYQIPADDRAALLADEQAAAEEEAALRAAEEDDENFLASDADD
EDDDGDDDDEAGVEEIDTSEKDHVATIEDGQVENGEDAEDDSSDDDDSEDDDVAEGDTDN
GNKRRGRGRGRSQQGRVRNGRKGSGNRGSRAKEIDEARAKRQALRRRYKIQDVIQRRQVL
LVQVVKEERGNKGAALTSYLSLAGRYCVLMPNSSHGGGISRKISSGADRKRLKTIVSGLN
LPKTMGLIVRTAGLSRTKPEIKRDFDYLARLWDEIRERTLRSSAPSVIHSDSDLIKRAIR
DIYNREIEEVIVEGEDGYKAAKQFMKLLMPSHARRVKAYSDPVPLFQRYGAEDQLSAMYE
PVVQLKSGGYLVINPTEALVSIDINSGRSTKEHGIEQTALHTNLEAAREIARQLRLRDMA
GLVVIDFIDMDHNSNVRKVERAMKDALKNDRARIQVGRISGFGLMEMSRQRLRTGVLEAS
TRQCPHCDGTGLVRTASSAGLSALRFIEDEAAKGKGTVITLYASTEAAVYLLNAKREDLS
EIESRYGVTVEVQPEGEDEGAKMRVSSSGPKPTEAPKFDPIVDDEEEEGVSDEDEDADDD
IEESSDEGDNGQRKKRRRRRRGGRGRNKNRANEDSDEESTSDKAEVEEDSGTGESSDTDD
AEAEADGDAKPRRGRRGGRGRSRRKPEDGAADAQEDKPEGEVARTSESETPPAEPEAEPV
AEEKPKRRRAPRKKKVEEAATGDETSATEDEVTAEPAPEEKPKRKRAPRKKKVEEAPANE
AAEAQPAAEAEEAPKRKRAPRKKAEPKVAAPKAEVTAPEPDKEPEAANDANGQADAADAP
ANNAAADDATEAPRRGGWWQRTFGN
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgcgcatgctaatcgatgcgcgccacccggaagaaacacgggtggcggtcctc
aagggtaaccggattgaggagttcgatttcgaatctgccgaacataagcagataaaaggc
aatatctatctagccaaagtcaccagggttgagccatcgcttcaggcggctttcgttgat
ttcggcggcaatcgtcatggctttctggccttcagtgaaatccaccctgattattaccag
atcccggctgatgatcgcgcagccctgcttgcggatgaacaggccgcagcggaagaagaa
gccgctttgcgcgcggccgaagaagatgacgaaaatttcctcgcatctgacgctgatgat
gaagatgacgatggtgatgatgacgacgaggccggtgtcgaggaaatcgacacttcggaa
aaggaccatgttgccactatcgaagatggacaggtcgaaaacggcgaagatgccgaggac
gattcttccgatgatgacgacagcgaagatgacgacgttgccgagggcgatacggacaat
ggcaacaagcgtcgcggacgcggccgaggtcgcagccagcagggccgtgtccgcaacgga
cgcaagggttcaggcaatcggggcagccgcgccaaggaaattgacgaggctcgcgccaaa
cgccaggctctgcgccgccgttacaagattcaggacgttatccagcgccgccaggtgctc
ctcgtccaggttgtaaaggaagagcgcgggaataagggcgctgcgctcacatcctatctc
agcctggccgggcgctattgcgtgctgatgcccaattctagccatggcggcggcatttcg
cgcaagatatccagtggcgccgaccgcaagcggttgaagacaatcgtgtcaggcctcaat
ctgcccaagaccatgggtctgatcgtgcgtaccgccggactttcgcggaccaagccggaa
atcaagcgtgatttcgactatctcgccagactgtgggatgaaattcgtgagcgcactctc
agatccagcgcgcccagcgtcatccattctgattccgatctgataaaacgtgccattcgc
gacatctacaatcgcgaaatcgaagaggtcatcgtagaaggcgaagatggctataaggca
gccaagcagttcatgaaattgctcatgcccagccacgcacggcgcgtgaaggcttacagc
gatcctgtgcccctgttccagcgttatggcgcggaagaccagctttccgccatgtatgaa
cctgtcgtgcagctgaaatcgggtggctatctggtcatcaatccgacagaggcgctggtg
tccatcgacatcaactctggccgctcgaccaaggaacacgggattgagcagacggccctg
cataccaatcttgaagcagcgcgggaaattgcccgtcaactcaggctgcgcgatatggct
ggcctcgtcgtgatcgacttcatcgacatggaccacaattccaatgtccgcaaagttgag
cgcgcgatgaaggatgcgctgaaaaacgatcgtgcacgcattcaggttggccgcatctcc
ggtttcggcctgatggagatgagccgccagcgcctgcgcaccggtgtgctagaagcgtcc
acccgccaatgccctcattgcgatggcaccggccttgttcgcacagcatcaagcgccggt
ctttcggccctgcggtttatcgaggacgaagcggccaaaggcaaaggcaccgtcatcacg
ctttacgcttccaccgaagcggcggtgtatctgcttaatgcaaagcgtgaagacctgtcc
gaaatcgaaagccgctatggcgttaccgtcgaagtgcaacctgaaggcgaagacgaaggc
gcaaagatgcgcgtctcctcctctgggccgaagccaactgaagcacccaaattcgatccc
atcgtcgatgacgaggaggaagagggtgtttctgacgaggatgaggatgcagatgacgat
atcgaggaatcgtctgatgaaggtgacaatgggcagcgcaagaagcgccgtcgccgtcgc
cgtggtggacgcggccgcaataagaaccgcgcgaatgaggattccgatgaagaatccacg
tcagataaagctgaagtcgaggaagactccggcacgggcgaatcttccgataccgatgat
gccgaagcggaggccgatggcgatgcgaagccacgtcgcggtcgtcggggcggtcgcggt
agatcgcgcaggaagccggaagatggtgctgccgatgctcaggaggacaagcctgaaggc
gaagtagcacggacttccgaaagcgaaacaccaccggcagaacctgaagcagaacccgtg
gctgaggaaaagcccaagcgcaggcgggcaccgcgcaagaagaaggttgaagaagcagca
accggtgatgagaccagcgcaactgaggatgaggtcactgccgagcctgcacccgaggaa
aagcccaagcgtaaacgtgcacctcgcaagaaaaaggtcgaagaggctccagctaacgaa
gcggcagaagcacaacctgccgctgaggccgaggaagcacccaagcgcaagcgtgccccc
cggaagaaagcagagcccaaggttgctgcgcccaaggccgaagtgaccgcacccgaacct
gacaaggaacctgaagcggccaatgacgcaaatggtcaggctgacgctgctgatgctccc
gctaacaatgccgctgcagacgatgcgactgaagcgcctcgtcgcggtggctggtggcag
cgtactttcggcaattga
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