Erythrobacter sp. SDW2: LY632_08210
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Entry
LY632_08210 CDS
T10668
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
erys Erythrobacter sp. SDW2
Pathway
erys03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
erys00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LY632_08210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
erys03019
]
LY632_08210
Messenger RNA biogenesis [BR:
erys03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LY632_08210
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RMMBL
Lactamase_B
Lactamase_B_2
RNase_J_C
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
UIP05696
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Position
1678809..1680458
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AA seq
549 aa
AA seq
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MKNDYTPEDELLFLALGGSAEIGMNVNLYGCQGKWLMVDLGMTFGANEYPGTELVFADLD
FIEERADDLIGVVLTHAHEDHIGAVPYFAADLGVPLYATPFTAELVRRKLQEADLLDEVE
VVVIEEDHGEIELGPFTVTYLPLAHSIAEGNALLIDTPFGRVFHTGDWKLDEDPIIGEPT
TEEELRQIGDDGVLALVCDSTNVFNPNSSGSEGAVYKGLLDEVSKWSGRRVLVTTFASNV
ARLQTLGEVAKATGRELCIAGRSLDRIIDVAKQSGYLQDFPNVVDWDTAMGLPRGQVLIL
ATGGQGEPRAALARIAEENHPLELSSGDVVLFSSRQIPGNELSIGVIQNRLAARGIVMVT
DRQSMIHVSGHPGRPELAALYSWLRPEILVPVHGEIRHMQEQARFGKENGIPHNIFQANG
DIVRLAPGTPGRVAQVHTGRLLLDGDIIVPADGESIVMRRRLAHNGVVVVVLDAKGRPQV
EGLGLPLDEDYPAFVEEAQADIVDALKKLRGKDTGSREAIIEAARLAARRAATRWSGKKP
QVKVMLAEA
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
gtgaagaacgattacacccccgaagacgaactgcttttcctcgcccttggcggctctgcc
gagatcggcatgaacgtcaatctctatggctgtcagggcaagtggctgatggttgacctc
ggaatgaccttcggtgcgaacgaataccccggcaccgaactggtctttgctgaccttgat
ttcatcgaggaacgggcggacgacctgatcggtgtcgtgctgacccacgcacatgaggac
catatcggcgcggtgccctatttcgctgccgacctcggcgtgccgctctatgcaacgccc
ttcacggccgagttggtccgacgcaagcttcaggaggccgatctcctcgatgaagtcgaa
gttgtcgtcatcgaggaagatcatggcgagatcgagcttgggccgttcaccgtaacctat
ctcccgctcgcgcactcgattgccgaaggcaacgcactgctgatcgacacgccctttggc
cgggtgttccacaccggcgactggaagctcgacgaggatccgatcatcggcgagccgacc
accgaggaggaattgcgccagatcggcgacgacggcgtgctggcgctggtgtgcgacagc
accaatgtgttcaatccaaattccagcggatcggaaggcgcggtctacaagggcctgctc
gacgaggtaagcaagtggtccgggcggcgggtactggtgaccaccttcgcttccaatgtc
gcgcgcctgcagacgctgggcgaagtagccaaggcaaccgggcgcgagctgtgcattgcc
gggcgctcgctcgatcggatcatcgatgtcgccaagcagtcgggatatttgcaggatttc
ccgaatgtggtcgactgggatacggcaatgggcctgcctcgcgggcaagtgctgatcctc
gcgaccggcgggcagggtgagccgcgcgcggcgctggcccgcattgccgaggagaaccac
ccgctggagctgtcgagcggcgacgtggtgctgttctccagccgccagatccccggcaac
gagctcagcatcggggtgatccagaaccggctcgccgcgcgcgggatcgtgatggtgacc
gaccggcagagcatgatccatgtctccggtcatcctggtcgcccggaacttgccgcgctc
tacagttggctgcggccggagatcctcgtccccgtccatggcgagatccgtcacatgcag
gaacaggcgcggtttgggaaagaaaacggcatcccgcacaacatcttccaggccaatggc
gacatcgtgcgactggccccgggcacgccgggacgggttgcgcaggtacacaccggcagg
ctgctgctggacggcgacattatcgtcccggccgatggcgagagcatagtcatgcgccgc
cgcctggcgcacaacggggtcgtagtggtggtgctcgatgccaagggacgcccgcaggtt
gaagggttggggctgccgctggatgaggactacccggcctttgtcgaggaagcgcaggcc
gatatcgtcgatgccctgaagaagctgcgcggcaaggataccggcagcagggaagcgatc
atcgaagccgcgcgcctcgccgcgcggcgggcggcaacccgctggtcaggcaagaagccg
caggtcaaagtcatgctggcggaagcctga
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