KEGG   Erythrobacter sp. SDW2: LY632_08210
Entry
LY632_08210       CDS       T10668                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
erys  Erythrobacter sp. SDW2
Pathway
erys03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:erys00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LY632_08210
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:erys03019]
    LY632_08210
Messenger RNA biogenesis [BR:erys03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     LY632_08210
SSDB
Motif
Pfam: RNase_J_b_CASP RMMBL Lactamase_B Lactamase_B_2 RNase_J_C Anti-Pycsar_Apyc1
Other DBs
NCBI-ProteinID: UIP05696
LinkDB
Position
1678809..1680458
AA seq 549 aa
MKNDYTPEDELLFLALGGSAEIGMNVNLYGCQGKWLMVDLGMTFGANEYPGTELVFADLD
FIEERADDLIGVVLTHAHEDHIGAVPYFAADLGVPLYATPFTAELVRRKLQEADLLDEVE
VVVIEEDHGEIELGPFTVTYLPLAHSIAEGNALLIDTPFGRVFHTGDWKLDEDPIIGEPT
TEEELRQIGDDGVLALVCDSTNVFNPNSSGSEGAVYKGLLDEVSKWSGRRVLVTTFASNV
ARLQTLGEVAKATGRELCIAGRSLDRIIDVAKQSGYLQDFPNVVDWDTAMGLPRGQVLIL
ATGGQGEPRAALARIAEENHPLELSSGDVVLFSSRQIPGNELSIGVIQNRLAARGIVMVT
DRQSMIHVSGHPGRPELAALYSWLRPEILVPVHGEIRHMQEQARFGKENGIPHNIFQANG
DIVRLAPGTPGRVAQVHTGRLLLDGDIIVPADGESIVMRRRLAHNGVVVVVLDAKGRPQV
EGLGLPLDEDYPAFVEEAQADIVDALKKLRGKDTGSREAIIEAARLAARRAATRWSGKKP
QVKVMLAEA
NT seq 1650 nt   +upstreamnt  +downstreamnt
gtgaagaacgattacacccccgaagacgaactgcttttcctcgcccttggcggctctgcc
gagatcggcatgaacgtcaatctctatggctgtcagggcaagtggctgatggttgacctc
ggaatgaccttcggtgcgaacgaataccccggcaccgaactggtctttgctgaccttgat
ttcatcgaggaacgggcggacgacctgatcggtgtcgtgctgacccacgcacatgaggac
catatcggcgcggtgccctatttcgctgccgacctcggcgtgccgctctatgcaacgccc
ttcacggccgagttggtccgacgcaagcttcaggaggccgatctcctcgatgaagtcgaa
gttgtcgtcatcgaggaagatcatggcgagatcgagcttgggccgttcaccgtaacctat
ctcccgctcgcgcactcgattgccgaaggcaacgcactgctgatcgacacgccctttggc
cgggtgttccacaccggcgactggaagctcgacgaggatccgatcatcggcgagccgacc
accgaggaggaattgcgccagatcggcgacgacggcgtgctggcgctggtgtgcgacagc
accaatgtgttcaatccaaattccagcggatcggaaggcgcggtctacaagggcctgctc
gacgaggtaagcaagtggtccgggcggcgggtactggtgaccaccttcgcttccaatgtc
gcgcgcctgcagacgctgggcgaagtagccaaggcaaccgggcgcgagctgtgcattgcc
gggcgctcgctcgatcggatcatcgatgtcgccaagcagtcgggatatttgcaggatttc
ccgaatgtggtcgactgggatacggcaatgggcctgcctcgcgggcaagtgctgatcctc
gcgaccggcgggcagggtgagccgcgcgcggcgctggcccgcattgccgaggagaaccac
ccgctggagctgtcgagcggcgacgtggtgctgttctccagccgccagatccccggcaac
gagctcagcatcggggtgatccagaaccggctcgccgcgcgcgggatcgtgatggtgacc
gaccggcagagcatgatccatgtctccggtcatcctggtcgcccggaacttgccgcgctc
tacagttggctgcggccggagatcctcgtccccgtccatggcgagatccgtcacatgcag
gaacaggcgcggtttgggaaagaaaacggcatcccgcacaacatcttccaggccaatggc
gacatcgtgcgactggccccgggcacgccgggacgggttgcgcaggtacacaccggcagg
ctgctgctggacggcgacattatcgtcccggccgatggcgagagcatagtcatgcgccgc
cgcctggcgcacaacggggtcgtagtggtggtgctcgatgccaagggacgcccgcaggtt
gaagggttggggctgccgctggatgaggactacccggcctttgtcgaggaagcgcaggcc
gatatcgtcgatgccctgaagaagctgcgcggcaaggataccggcagcagggaagcgatc
atcgaagccgcgcgcctcgccgcgcggcgggcggcaacccgctggtcaggcaagaagccg
caggtcaaagtcatgctggcggaagcctga

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