Erythrobacter sp. SDW2: LY632_09650
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Entry
LY632_09650 CDS
T10668
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
erys Erythrobacter sp. SDW2
Pathway
erys03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
erys00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LY632_09650 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
erys03400
]
LY632_09650 (mfd)
Enzymes [BR:
erys01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LY632_09650 (mfd)
DNA repair and recombination proteins [BR:
erys03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LY632_09650 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
MFD_D3
SNF2-rel_dom
AAA_16
Cas3-like_C_2
SecA_DEAD
AAA_30
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
UIP05965
LinkDB
All DBs
Position
1973081..1976581
Genome browser
AA seq
1166 aa
AA seq
DB search
MPDLARILKAESPLTLASVARGAQPMVMADLSRAATGRAVFIAPDEAAMHAVAEAAQYFA
PELEVIEFPAWDCLPYDRASPALSVSARRLAALHRLQAGKSGSQLLVTTVNAALQRVLTP
FRIRESVREFSVGTEIGMESLSALLRRQGYSRVDTVVDAGEYAIRGSIVDIFPSGLEQGL
RLDFFGDELESLRLFDPSTQMSTEVIESHLLLPASEALLDEDSIKRFRSRYREQFGAAAT
QDPLYEAVSDGRRLAGMEHWLPLFEERLSTVFDHFGDNDLIVMDSAATSAVEERLKDIGD
YRESRANATGQAKGSYRPLQPSALYLDGDEWTEGLANAPAHRTTIFAEPASDSVVDFGFG
SARDFTPERGRGDNVYEVAAKHLKALGKAGKRPLLAAYSTGSRSRIASILSEAGCETKLA
DSWQEALGLAAKGTPVALVLPVETGFANDQLELLTEQDLLGDRLVRRKKKRKDSDAFLAE
LQTLNRGDLVVHVEHGIGKYLGLEPIAVGKSQHDCVMLEYRGGDKLYIPVENIDVLSRYG
SSEDAVMLDKLGGEGWQRRRAALRERIREIAGELMRTAAMRALRKAPVLETDEASYNQFL
DRFPWSETEDQDRAIADVLGDLESGRPMDRLVCGDVGFGKTEVALRAAFVAAMAGQQVAV
VAPTTLLARQHFENFSARFAGFPLKVGRLSRLVPAKEMAETRDGLKSGDIDIVVGTHAIL
SKSTQFKNLGLVIVDEEQRFGVTHKEALKQLRANVHMLTLTATPIPRTLQMAMSGLRELS
TIQTPPVDRLAVRTYVMEWDDMVMREALLREHHRGGQSFIVVPRISDMEGVEEWLRENVP
EIKAISAHGQMGAAEIESRMSAFYEGKYEVLLSTTIVESGLDLPNANTIIIHRADIFGLA
QLYQLRGRVGRSKLRAYAYLTHAADTQLSEVAEKRLKVLGDLDSLGAGFQLASHDLDIRG
AGNLLGDEQSGHIREVGFELYQSMLEEAILAAKAGDAGMLEERDPLSPQITVDAPIMIPE
DYIPDLTVRMALYRRLNQAQDKAEIEALAAEMIDRFGPLPSATANLVKLIEIKHQAIEAN
IAKIDVGAKGTLVTFHKDDFPDGPGLLAYVDRLNQGTQDTAKLRPDMKLVINRAWGDPQS
RLNGLFQLTKGLSSIARRKRKPQKAA
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgcctgacctcgcccgtatcctcaaagccgagtcgccgctgaccctcgcctcggtcgcg
cgcggggcgcagccgatggtgatggcggacctttctcgcgctgcgaccggacgcgcggtg
ttcatcgcaccggacgaagcggcaatgcacgccgtagccgaagcggcgcagtacttcgcg
cccgagttggaagtgatcgagttcccggcgtgggactgcctgccctatgaccgcgccagc
ccggccctttcggtcagtgcccggcgcctcgcggcgctgcaccggttgcaggcaggcaag
agcggttcgcaactgctggtcaccactgtcaatgccgcgcttcagcgggtgctgacgcca
ttccgcatccgcgaaagcgtccgcgagttttcggtcgggacagagatcgggatggagagt
ctctccgcactgctgcgccgccagggctattcgcgggtcgacacggtggtcgacgcgggc
gagtatgccattcgcggctcgattgtcgatatcttcccctccggcctggaacagggcctg
aggctcgatttcttcggcgacgaactcgaaagcctgcggctgttcgatccgtcgacgcag
atgagcaccgaggtcatcgaatcgcacctgctgcttcccgccagcgaggccttgctcgac
gaagacagcatcaagcgtttccgcagccgctatcgcgaacagttcggcgcggcggcgacg
caggacccgctttacgaggcagtcagtgacgggcgacggcttgccgggatggagcactgg
ctaccgttgttcgaggaacgcctcagcactgtcttcgaccacttcggcgacaacgacctg
atcgtcatggacagcgccgcaaccagcgcggtcgaggaacggctcaaggatatcggcgac
taccgcgaaagccgggccaatgcgacgggacaggccaagggcagctatcgcccgctccag
ccctccgcgctgtatctggacggcgatgaatggaccgaaggtctggccaatgcacccgcg
caccgcaccaccatctttgctgaacctgcaagcgacagcgtagtcgacttcggctttggt
tcagcccgcgatttcactcccgagcgcggccgcggcgacaacgtctacgaagtcgcagcg
aagcacctgaaggcgctgggcaaggcgggcaagcgtccgctgctggctgcctactctacc
ggcagtcgcagccgcatcgcctcgatcctctccgaagcgggctgcgagaccaagttggcc
gacagctggcaagaggcgctcgggctcgcggccaagggcaccccggtggcgctggtgttg
ccggtcgaaacgggcttcgccaacgaccagttggaactgctgaccgagcaggatctgctc
ggcgaccggcttgtccggcgcaagaagaagcgcaaggattccgatgccttcctggccgaa
cttcagacgctcaaccggggcgatctggtggtccatgtcgaacacgggatcggcaagtat
ctcggccttgagcccatcgccgtgggcaagagccagcacgattgcgtgatgctggagtac
cggggcggcgacaagctctacatcccggtcgagaacatcgacgtgctgagccgctatggc
tcctccgaagatgcggtcatgctcgacaagctcggcggcgaaggctggcagcgccgccgc
gccgcgctgcgcgaacgtatccgggagatcgctggcgagttgatgcgcaccgccgcaatg
cgggcgctgcgcaaggccccggtgctggagaccgacgaggccagttacaaccagttcctc
gaccgcttcccttggtcggaaaccgaggatcaggaccgcgccatcgccgatgtgctgggc
gatctggaaagcggccgcccgatggaccggctggtctgcggcgatgtcggcttcggcaag
accgaggtggcccttcgcgccgcctttgtcgcggccatggccgggcagcaggtcgctgtg
gtcgccccgaccaccctgctcgcccgccagcatttcgagaacttcagcgcgcgctttgcc
ggctttccgctcaaggtcgggcggctcagccgcctggtcccggccaaggagatggcggag
acccgcgatggcctgaaatcgggcgatatcgatatcgtagtcggcacccacgcgatcctc
agcaaatcgacgcagttcaagaacctcggcctggtgatcgtcgacgaggagcagcggttc
ggggtgacccacaaggaagcgctcaagcagctgcgcgccaatgtgcatatgctcaccctc
accgccacgccgatcccgcgcaccctgcagatggcgatgagcgggctgcgcgagctctcg
accatccagaccccgccggtcgatcgcctcgcagtgcgcacatatgtgatggaatgggac
gacatggtgatgcgcgaggcgctgctgcgcgagcatcaccgcggcgggcagagcttcatc
gtcgtgccgcgaatttccgacatggaaggcgtcgaggaatggctgcgcgagaatgtgccg
gagatcaaggcgatctccgctcacggccagatgggcgccgccgaaatcgagagccgcatg
agcgcgttctacgagggcaagtacgaggtgctgctttcgaccaccatcgtcgaaagcggg
ctggaccttcccaacgccaacaccatcatcatccaccgcgccgatatcttcggcctcgcc
cagctctaccagctgcgaggccgcgtcggccgctcaaagctgcgcgcttatgcctatctg
acccatgcggcggatacacaattatcagaagtggcggagaagcggttgaaagtgctgggc
gatctcgattccctgggtgccgggttccagctcgccagccacgatctcgacattcgcggc
gcgggcaatctgcttggcgacgagcagtcgggccatatccgggaagtcgggttcgaactc
taccagtcgatgctggaggaagcgatcctcgctgccaaggcaggggacgccgggatgctg
gaagagcgcgatccgctcagcccgcagataaccgtcgatgccccgatcatgataccggag
gactatatccccgacttgaccgtgcggatggcgctctatcgccgcttgaatcaggcgcag
gacaaggcagagatcgaggcactggcggcggaaatgatcgaccgcttcggccccctgccc
tccgccaccgccaatctcgtaaaactgatcgagatcaagcaccaggcgatcgaggccaat
atcgccaagatcgacgtcggcgcgaagggcacgctcgtcacgttccacaaggacgatttc
cccgacgggcccgggctgctggcttatgtcgaccggctgaaccaagggacacaggacacc
gccaagctgcgccccgacatgaagctggtgatcaaccgcgcgtggggtgacccgcaaagc
cgtctcaacggcctgttccagctgaccaagggactgagcagtatcgcccgccgcaagcgc
aagcctcagaaggcagcctga
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