Erythrobacter sp. SDW2: LY632_10585
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Entry
LY632_10585 CDS
T10668
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
erys Erythrobacter sp. SDW2
Brite
KEGG Orthology (KO) [BR:
erys00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
erys03019
]
LY632_10585 (hrpB)
Enzymes [BR:
erys01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LY632_10585 (hrpB)
Messenger RNA biogenesis [BR:
erys03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LY632_10585 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
Flavi_DEAD
CON_HrpB
HA2_N
AAA_30
AAA_19
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UIP06137
LinkDB
All DBs
Position
complement(2176454..2178883)
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AA seq
809 aa
AA seq
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MTDLPVLAVLPELREALRDACGAVLIAPPGAGKTTAVAPALLEEAWCEGQIILLSPRRVA
ARAAAERMAEMLGEKSGETVGYLTRLDSKASARTRVLVMTEAIFVNRIVEDPELAGISAV
LFDEAHERHLDSDLGLALAIESQQVLREDLRLVVMSATIDGTRFARLLGDGTPVIESEGK
SYPLRIEWFGSNPAVPVEDHVAEAVLAAWRGEKGDILAFLPGVREIERVRERLEARLPQV
PILPLHGQVEPQGQRLAIRRDCEGRRRIVLATAIAETSLTLDGVSVVVDSGLTRRAEYDR
AAGTTHLVTRRASQASATQRAGRAARQGPGVAYRLWEEGGHAGRAEFDPPEIVTSDLAPL
LLALAQWGTQDPRSLAWLDTPREASLAAAKARLQSMAAVDAEGRITELGRKIAALPLDPG
LAAAVLSGAEAGQAEPVARLALLVQERGLGGRSEDLLARLNRWNADRSPRAEASRKLAER
WARKAEQLVGTLALPQGEPALHLALAMPDMVAKRRDASGEDWLSAGGRGYKLDPASSLAR
AEWLVIADAQGQAKGARITAAAELSPVEIETGLADKIEQSTILRWNTAEKRVEARRERRL
GQIVLSSGPDPSPNPQAVVDLLVDKCVERLGEHVPADLLARGRFAGIPGLSVDGLKETAA
LWLAPLLEGKRSLDLDRGRVVEAILGQLDWNERQRLDSVAPRHFTSPAGTTHTIDYAGDD
APSVEVRVQALFGLDRQPMIGTTPLLLKLTDPGGKPMQATRDLPGFWRGSWRDVQKAGKG
RYPKHRWPDQPWAEKPSLKTKNAFSRGDS
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgatctgcccgtcttggccgtcctgcccgaattgcgggaagcgctgcgcgatgcg
tgcggcgctgtcctgatcgcgcctcccggtgcgggcaagaccacggcggtggctccggcc
ctgctggaagaggcgtggtgcgaagggcagatcatcctgctcagcccgcgccgtgttgcc
gcccgtgccgctgccgagcggatggcggaaatgctgggcgagaaatcgggcgagaccgtg
ggttatctcacacggctcgacagcaaggcctcggcgcggacccgcgttctcgtcatgacc
gaggcgatcttcgtcaatcgtatcgtcgaggacccggagttggcggggatctccgccgtg
ctgttcgacgaggcgcatgagcggcatctcgacagtgacctgggcttggcgctcgccatc
gagagccagcaggtgctgcgcgaagacctgcggctggtggtgatgtctgccaccatcgac
gggacgcgtttcgcccggctgctgggcgatggcaccccggtcatcgagagtgagggcaag
agctatccgctgcggatcgaatggttcggcagcaatcctgcggtgccggtcgaggatcat
gtcgccgaggcggtgttggcggcatggcgaggcgagaagggcgatatcctcgcattcctc
cccggcgtgcgcgagatcgagcgcgtgcgcgagcggctggaggcacgcttgccgcaggtg
ccgatcctgccgcttcacgggcaggtcgagccacagggtcagcgcctcgcaatccgccgc
gactgtgaagggcggcggcgcatcgtgctcgcgaccgcgattgcggagacctcgctaacg
ctcgacggcgtatcggtggtggtggatagcggcctgacgcgccgcgccgagtatgaccgg
gcggcaggcaccacccatcttgtcacccgccgcgccagccaggcctccgccacccagcgc
gctggccgcgcggctcggcagggacccggtgtcgcctatcgcttgtgggaagaaggcggc
cacgcggggagggccgagttcgatccgccggaaatcgtcacctcggatctcgcgccgctg
ctgctggcgctggcgcaatggggtacgcaggacccgcgctcgctggcgtggctcgatacg
ccgcgggaggcttcgctggcagccgcgaaggcgcgcttgcagtctatggcggcggtggat
gccgaaggccggattaccgagcttggacggaagattgccgccctcccgctcgaccccggc
ctcgcggctgcggtgctttcgggggcggaggcaggtcaggccgaaccagtcgcgcggctg
gcgctgctggtccaggagcgcgggttgggtggccggagcgaggatctgctggcgcggttg
aatcggtggaacgccgaccgctcgccgcgggccgaggccagccgcaagcttgcagagcgc
tgggcgcgcaaggccgagcagttggttgggactcttgccttgccgcagggcgaaccggcc
ctccacctcgctctcgccatgcccgacatggtggcgaagcggcgcgatgcctcgggcgag
gattggctttccgcgggggggaggggttacaagctcgacccggcatcttcgttggcgcgg
gccgaatggctggtgattgcggacgcgcaggggcaggccaaaggagcacggatcaccgcg
gctgcggaattgtcgcccgtcgaaatcgagacaggcctcgccgacaagatcgagcaatcg
acgatactgcgctggaataccgcagaaaagcgcgtcgaggcccgccgcgagcggcggctc
gggcaaatcgtcctgagcagcgggccagacccgtcgcccaacccgcaggcagttgtggac
ttgcttgtggataaatgtgtcgagaggttgggggaacatgttcctgccgacctgctggcg
cgcgggcgtttcgcgggtattcccgggctgtcagtcgatggtctgaaggagaccgcagca
ctctggctcgcccccttgctcgagggcaagcgctcgctcgatctcgaccggggcagggtg
gtcgaagcgatccttggccagctcgactggaacgagcgccagcggctcgacagtgtcgcc
ccgcgccatttcacctcgcctgccgggacaacccacaccatcgactatgccggggacgat
gcaccgagcgtcgaggttcgcgtgcaggctctgttcgggctcgaccggcagccgatgatc
ggcaccacgcccttgctcctcaagctgaccgatcccggcggcaagccgatgcaggccacc
cgcgacctgcccggcttctggcgcggttcttggcgtgatgtgcagaaggctggcaagggc
cgctatcccaagcaccgctggcccgaccagccatgggcggaaaagcccagcctcaagacc
aagaacgccttttcacgcggcgattcgtga
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