Erythrobacter sp. JK5: KDC96_04240
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Entry
KDC96_04240 CDS
T10266
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
eryt Erythrobacter sp. JK5
Pathway
eryt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eryt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KDC96_04240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eryt03019
]
KDC96_04240
03009 Ribosome biogenesis [BR:
eryt03009
]
KDC96_04240
Enzymes [BR:
eryt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KDC96_04240
Messenger RNA biogenesis [BR:
eryt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KDC96_04240
Ribosome biogenesis [BR:
eryt03009
]
Prokaryotic type
rRNA processing factors
KDC96_04240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DUF7895
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
QUL38612
LinkDB
All DBs
Position
complement(873833..876475)
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AA seq
880 aa
AA seq
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MATRMLIDARHSEETRVAVLKGNRIEEFDFESAEHKQIKGNIYLAKVTRVEPSLQAAFVD
FGGNRHGFLAFSEIHPDYYQIPQSDREQLLAEEAEAAEEEARLRAEEEDEGITPGDEYDA
DEESAEALAEDLAEDGLEEIDTSEKDKVATIEDGESDDDSDDDSDDDDDDSDDDSDDDEQ
ADDDGDSKPRRGRRGRGRRRQGKDKPKGRSRAKEVDEVRAKRMALRRRYKIQDVIQRRQV
LLVQVVKEERGNKGAALTTYLSLAGRYTVLMPNSSHGGGISRKISSANDRKRLKQVVSDL
SLPKSMGLIVRTAGLSRNKTEIKRDFDYLARLWDEIRQTTLGSTAPSLIHSDSDLIKRAI
RDIYNRDIEEVVVEGEEGYKSAKAFMKMLMPSHARRVKAYSDPVPLFQRYGAEDQLRAMY
DPMVQLKSGGYLIINPTEALVSIDINSGRSTKEHGIEQTALHTNLEAAREIARQLRLRDM
AGLVVIDFIDMEYNSNIRKVEKAMKDALKSDRARIQVGRISGFGLMEMSRQRLRTGVLEA
TTRECPHCDGSGLVRTASSAGLSALRLIEDEAAKGKGTIIRLAASTEAAVYLLNEKRHDL
VEIEQRYGVSVEVVPEGEDEGAKMSVSSNGPRPSERPKFEAIVDDDDDDEDVPEEDFGED
EDDAPKKKKRRRRRGGRGRTKKRQDEGAEDDADDSDDDSDDEGDDDSESHRASDDENGAP
KKRRRRRGGRGRRRKDEDSETVSEKQAEALEEVSEQVKEDMTVVAGPDDAPETAEAMAEE
TPKPKRKRAPRKKKVEETEAKTAEEAPAEEAEAEAEKPKRKRAPRKKKVEETEAAVQDAE
TAPKPAKKAKSANDDNGGEPTGDDADGKQRRGWWQRTFGE
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgcgcatgctaatcgatgcgcgccactcggaagaaacccgggtggcggtgctc
aaaggcaaccggattgaggaattcgatttcgaatctgccgaacacaagcagatcaaaggc
aatatctatctcgcgaaagtaaccagggtcgaaccgtcgctgcaggcggcgttcgtcgat
ttcggcggcaatcgccacggctttctcgccttcagcgaaatccatcccgattattaccag
atcccacaatccgatcgcgaacaattgctcgccgaagaggcagaggccgccgaagaagag
gcgcggctcagagcggaagaggaagacgagggcatcactcccggcgacgaatacgacgcc
gacgaggaaagcgcggaggcgctggccgaagatctggccgaagacgggctggaggaaatc
gacacttccgaaaaggacaaggtcgccacgatcgaggacggcgagtccgacgacgacagc
gacgacgacagcgacgacgacgacgacgattcggacgacgatagcgacgacgacgaacag
gccgacgatgacggtgattcgaagccgcggcgcggccgccgcgggcgcggtcgccgtcgg
cagggcaaggacaagccgaaaggtcgcagccgcgccaaggaagtcgacgaagtacgcgcc
aagcgcatggcgctgcgccgccgctacaagattcaggacgtcatccagcgccggcaggtg
ctgctggtgcaggtcgtcaaggaagagcgcggcaacaagggcgcggcgctgaccacctat
ctcagcctcgccgggcgctacaccgtgctgatgcctaacagctcgcacgggggcggtatc
agccgcaagatcagttcggccaacgaccgcaagcggttgaagcaggtcgtctccgatctc
tcgctgcccaagagcatgggcctgattgttcgcaccgccgggctgagccgcaacaagacc
gagatcaagcgcgacttcgattacctggcgcggctgtgggacgaaatccggcagaccacg
ctcggctcgaccgcgccttcgctgatccattcggacagcgacctgatcaagcgtgcgatc
cgcgatatctacaatcgcgacatcgaagaggtcgtggtcgaaggcgaggaaggctacaaa
tcggccaaggcgttcatgaaaatgctgatgcccagccatgcgcgccgggtgaaagcctat
tccgatccggttccgctgttccagcgctatggcgccgaagaccagctgcgggcgatgtac
gatccgatggtgcagctcaaatcgggcggatacctgatcatcaacccgaccgaggcgctg
gtgtcgatcgacatcaactcgggccgctcgaccaaggagcacgggatcgagcagaccgcg
ctgcacaccaacctcgaggccgcgcgcgagatcgcccgtcagttgcggctgcgcgacatg
gccggtttggtggtgatcgacttcatcgacatggaatacaattccaacatccgcaaagtc
gaaaaggcgatgaaggatgcgctcaagtccgaccgggcgcgcatccaggtcgggcggatt
tcgggctttggcctgatggaaatgagccgccagcggctgcgcacgggggtgctcgaggcg
accacccgcgagtgcccgcactgcgacggctcgggcctcgtccgcactgcttcttctgca
ggcctctcggccctgcgtctgatcgaggacgaagccgccaagggcaagggcacgatcatc
aggctcgccgccagcaccgaagcggcggtctatctcctcaacgagaaacgccacgacctg
gtcgagatcgagcagcgatacggcgtgtcggtagaggtcgtgcccgaaggcgaggatgaa
ggcgcgaagatgagcgtctccagcaacggtccgcgcccgtccgaacggcccaagttcgaa
gcgatcgtcgatgacgacgacgatgacgaggatgtgcccgaagaggacttcggcgaagac
gaagacgacgctccgaagaagaagaagcgccgccgcaggcgcggtggtcgcggtcgcacc
aagaagcgccaggatgagggcgccgaagacgacgccgacgattccgacgacgatagcgac
gacgaaggcgacgacgatagcgaaagccatcgcgcctccgacgacgagaacggtgcgccc
aagaagcgccgccgccgacgcggcggacgcggacgccgccggaaggatgaggattcggaa
acggtcagcgaaaagcaggccgaagcgcttgaagaggtgtccgagcaggtcaaggaggac
atgaccgtcgtcgccggccctgacgacgctcccgaaaccgccgaggccatggccgaagag
actcccaagccgaagcgcaaacgggctccgcgcaagaagaaggtcgaggaaaccgaggcg
aaaaccgccgaggaagcaccggccgaggaagcggaagcggaagctgaaaagccgaagcgc
aagcgcgcaccgcgcaagaagaaggtcgaagagaccgaggctgcggtgcaagacgccgaa
accgctccgaagccggcgaagaaggcaaaatccgcaaacgacgacaatggcggcgaaccg
acaggcgatgacgccgacgggaagcagcgccgcggctggtggcagcggaccttcggggaa
tga
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