KEGG   Erythrobacter sp. JK5: KDC96_04435
Entry
KDC96_04435       CDS       T10266                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
eryt  Erythrobacter sp. JK5
Pathway
eryt03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:eryt00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    KDC96_04435
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:eryt03019]
    KDC96_04435
Messenger RNA biogenesis [BR:eryt03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     KDC96_04435
SSDB
Motif
Pfam: RNase_J_b_CASP Lactamase_B RMMBL Lactamase_B_2 RNase_J_C Anti-Pycsar_Apyc1
Other DBs
NCBI-ProteinID: QUL38642
LinkDB
Position
911522..913177
AA seq 551 aa
MKKNYTPEKELLFLALGGSGEIGMNVNLYGCDGKWLMVDLGMTFSGNEYPGVDLVFADLE
FIEERSKDLLGIVLTHAHEDHIGAVPYFAGELGVPLYATPFTADLVARKLEEAGLLGQVE
LNIIEEDHGHIEIGPFDVTYIPLAHSIAEGNALLIDTPYGRVFHTGDWKLDEDPIIGEPT
TEKELREIGDEGVLALVCDSTNVFNPNPSGSEGAVHRALMEEVARHEGKRVLVTTFASNV
ARLHTLGEVARETGRQLCVAGRSLDRIIEVAQDNGYLADFPTPVDFDTAMGLPRGEVLIL
ATGGQGEPRAALARIAEQNHPLELVGGDVVLFSSRQIPGNEIAIGKVQNALAARGITMVT
DRQSLIHVSGHPGRPELEALYSWLRPEVLVPVHGEMRHMREQAQLGKSCQIPSAVVQSNG
DIVRLAPGEPGRLAQVRAGRLVLDGDIIVPADGEAVTMRRRIAFEGVMVVVLARGERPYI
EAIGLPLDEDMTDFIEETQDDILKAIGKLRGKDARDPAAVHEAARLAARRAARRWAGKSP
QVRVVMPGASN
NT seq 1656 nt   +upstreamnt  +downstreamnt
gtgaaaaagaactatactcctgaaaaagagctgcttttccttgcactaggcggctcggga
gagattggcatgaacgtcaatctctatggctgcgatggcaagtggctgatggtcgacctc
ggcatgaccttctccggaaacgaatatcccggagtcgatctcgtcttcgcggacctcgaa
ttcatcgaggaacgcagcaaggacctgctcggcatcgtccttacccacgcgcacgaggat
catatcggcgcggtcccctatttcgcgggcgagctgggcgtgccgctctatgccacgccg
ttcaccgccgatctcgtcgcccgcaagctcgaggaggcgggcctgctcggccaggtcgaa
ctcaacatcatcgaggaagaccacgggcatatcgaaatcggcccgttcgacgtcacctac
atcccgctggcgcactcgatcgcggaaggcaacgcgctgctgatcgacacgccctatggc
cgtgtgttccacaccggcgactggaaactcgacgaagacccgatcatcggcgagccgacc
accgaaaaggaactgcgcgagatcggcgacgaaggcgtgctggcgctggtgtgcgattcg
accaacgtgttcaatcccaacccctccggatcggaaggcgcggtgcatcgcgcgttgatg
gaggaagtcgcccggcacgagggcaagcgcgtgctcgtcacgaccttcgccagcaacgtc
gctcggctccacacgctgggcgaagtcgcgcgcgaaaccggccggcaactctgcgttgcg
ggccgatcgctcgaccgcatcatcgaggtcgcgcaggacaatggctatctcgccgatttc
ccgacgccggtcgatttcgacacggcgatgggcctgccgcgcggcgaggttctcatcctc
gcgactggcgggcagggcgagccgcgcgccgcgctcgcccgcatcgccgagcagaaccac
ccgctcgaactcgtcggcggcgacgtggtgctgttctcctcgcgccagattcccggcaac
gagatcgcgatcggtaaggttcagaacgcgctcgccgcgcgcggcatcaccatggtgacc
gaccggcaaagcctgatccacgtctcgggccacccgggtcgacccgagctcgaggcgttg
tattcatggctgcgccccgaagtgctcgttccggtccatggcgagatgcgccacatgcgc
gaacaggcgcagctcggcaaaagctgccagattccgagcgcggtcgtgcaatcgaacggc
gatatcgtgcgcctcgcacccggcgaacccggaaggctcgcacaggtcagggccgggcgg
ctcgtgctggatggcgacatcatcgtgcccgctgacggcgaagccgtgacaatgcgtcgc
aggatcgcgttcgaaggtgtgatggtcgtggtgctggcacgcggcgagcgaccctatatc
gaagcgatcggcctaccgctcgatgaagacatgaccgatttcatcgaggaaacgcaggac
gatatcctcaaggcaatcggcaagctgcggggcaaggatgcgcgcgatcccgcggcggtt
cacgaggcagcgcgccttgccgcgcgtcgggcggcgcgccgctgggccgggaaaagcccg
caggtgcgcgtggtcatgccgggagccagcaactga

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