Erythrobacter sp. JK5: KDC96_04435
Help
Entry
KDC96_04435 CDS
T10266
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
eryt Erythrobacter sp. JK5
Pathway
eryt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eryt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KDC96_04435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eryt03019
]
KDC96_04435
Messenger RNA biogenesis [BR:
eryt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KDC96_04435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
RMMBL
Lactamase_B_2
RNase_J_C
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
QUL38642
LinkDB
All DBs
Position
911522..913177
Genome browser
AA seq
551 aa
AA seq
DB search
MKKNYTPEKELLFLALGGSGEIGMNVNLYGCDGKWLMVDLGMTFSGNEYPGVDLVFADLE
FIEERSKDLLGIVLTHAHEDHIGAVPYFAGELGVPLYATPFTADLVARKLEEAGLLGQVE
LNIIEEDHGHIEIGPFDVTYIPLAHSIAEGNALLIDTPYGRVFHTGDWKLDEDPIIGEPT
TEKELREIGDEGVLALVCDSTNVFNPNPSGSEGAVHRALMEEVARHEGKRVLVTTFASNV
ARLHTLGEVARETGRQLCVAGRSLDRIIEVAQDNGYLADFPTPVDFDTAMGLPRGEVLIL
ATGGQGEPRAALARIAEQNHPLELVGGDVVLFSSRQIPGNEIAIGKVQNALAARGITMVT
DRQSLIHVSGHPGRPELEALYSWLRPEVLVPVHGEMRHMREQAQLGKSCQIPSAVVQSNG
DIVRLAPGEPGRLAQVRAGRLVLDGDIIVPADGEAVTMRRRIAFEGVMVVVLARGERPYI
EAIGLPLDEDMTDFIEETQDDILKAIGKLRGKDARDPAAVHEAARLAARRAARRWAGKSP
QVRVVMPGASN
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaaagaactatactcctgaaaaagagctgcttttccttgcactaggcggctcggga
gagattggcatgaacgtcaatctctatggctgcgatggcaagtggctgatggtcgacctc
ggcatgaccttctccggaaacgaatatcccggagtcgatctcgtcttcgcggacctcgaa
ttcatcgaggaacgcagcaaggacctgctcggcatcgtccttacccacgcgcacgaggat
catatcggcgcggtcccctatttcgcgggcgagctgggcgtgccgctctatgccacgccg
ttcaccgccgatctcgtcgcccgcaagctcgaggaggcgggcctgctcggccaggtcgaa
ctcaacatcatcgaggaagaccacgggcatatcgaaatcggcccgttcgacgtcacctac
atcccgctggcgcactcgatcgcggaaggcaacgcgctgctgatcgacacgccctatggc
cgtgtgttccacaccggcgactggaaactcgacgaagacccgatcatcggcgagccgacc
accgaaaaggaactgcgcgagatcggcgacgaaggcgtgctggcgctggtgtgcgattcg
accaacgtgttcaatcccaacccctccggatcggaaggcgcggtgcatcgcgcgttgatg
gaggaagtcgcccggcacgagggcaagcgcgtgctcgtcacgaccttcgccagcaacgtc
gctcggctccacacgctgggcgaagtcgcgcgcgaaaccggccggcaactctgcgttgcg
ggccgatcgctcgaccgcatcatcgaggtcgcgcaggacaatggctatctcgccgatttc
ccgacgccggtcgatttcgacacggcgatgggcctgccgcgcggcgaggttctcatcctc
gcgactggcgggcagggcgagccgcgcgccgcgctcgcccgcatcgccgagcagaaccac
ccgctcgaactcgtcggcggcgacgtggtgctgttctcctcgcgccagattcccggcaac
gagatcgcgatcggtaaggttcagaacgcgctcgccgcgcgcggcatcaccatggtgacc
gaccggcaaagcctgatccacgtctcgggccacccgggtcgacccgagctcgaggcgttg
tattcatggctgcgccccgaagtgctcgttccggtccatggcgagatgcgccacatgcgc
gaacaggcgcagctcggcaaaagctgccagattccgagcgcggtcgtgcaatcgaacggc
gatatcgtgcgcctcgcacccggcgaacccggaaggctcgcacaggtcagggccgggcgg
ctcgtgctggatggcgacatcatcgtgcccgctgacggcgaagccgtgacaatgcgtcgc
aggatcgcgttcgaaggtgtgatggtcgtggtgctggcacgcggcgagcgaccctatatc
gaagcgatcggcctaccgctcgatgaagacatgaccgatttcatcgaggaaacgcaggac
gatatcctcaaggcaatcggcaagctgcggggcaaggatgcgcgcgatcccgcggcggtt
cacgaggcagcgcgccttgccgcgcgtcgggcggcgcgccgctgggccgggaaaagcccg
caggtgcgcgtggtcatgccgggagccagcaactga
DBGET
integrated database retrieval system