Erythrobacter sp. JK5: KDC96_06195
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Entry
KDC96_06195 CDS
T10266
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
eryt Erythrobacter sp. JK5
Pathway
eryt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eryt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KDC96_06195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eryt03019
]
KDC96_06195
Enzymes [BR:
eryt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KDC96_06195
Messenger RNA biogenesis [BR:
eryt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KDC96_06195
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QUL38938
LinkDB
All DBs
Position
complement(1266913..1268304)
Genome browser
AA seq
463 aa
AA seq
DB search
MKFSELGLSQPVLQALELKGYDTPTPIQYQAIPPVLEGRDLLGIAQTGTGKTAAFMLPAI
DRLRNSDNQIPFKSCRMLVLAPTRELAGQIAQSAKDYGALAGLKVQVIVGGTSVNKDRNK
LHRGTDILVATPGRLLDLIDQKAFNLSGVEVLVLDEADQMLDLGFIHALRRINQLVPKER
QTLFFSATMPKAIKELVSGYCTDPVQVSVTPAATTAERIEQYLFMVQQDEKQALLELILS
GNHNVPGDLERVLIFTRTKHGADRVVKKLYQRGIQANAIHGNKSQPQRQRALDEFRRGKV
SVLIATDVAARGIDIPGVSHVINYELPNVPEQYVHRIGRTARAGRDGIAIAFCGEDERAY
LKDIQRNTDASLDRLPLPENFRAVVEGVGPTKPAPRGASRVSQKKVKPKPFGKRPSEGAN
VQGESQSRSKPKRKHPSRAGKPHRTGSGGRPGGNRSRQRRSQG
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgaaattctcagaactcgggctgtcgcagcccgttctccaggcgctcgagctcaagggc
tacgatacgccgacaccgatccagtatcaggcgatcccgccggtgctcgaaggtcgcgac
ctgctcggcatcgcccagaccgggaccggcaagaccgccgccttcatgctccctgcgatc
gaccggttgcgcaacagcgacaaccagattccgttcaagtcctgccgcatgctggtgctc
gcgccgacacgcgaactggccgggcagatcgcccagagcgccaaggattacggcgcgctc
gctggcctcaaggtgcaggtcatcgtcggcggcacatcggtcaacaaggaccggaacaag
ctgcatcgcggcaccgatatcctcgtggcgactccgggccgcctgctcgacctgatcgac
cagaaggcgttcaacctgtcgggcgtggaagtgctggtgctcgacgaggccgaccagatg
ctcgatctcggtttcatccatgccctgcggcggatcaaccagctggtgccgaaggagcgt
cagacgctgttcttcagcgcgaccatgcccaaggcaatcaaggaactggtgtccggctat
tgcaccgatccggtgcaggtcagtgtaacccccgccgccaccacggccgagcggatcgag
cagtatcttttcatggtccagcaggacgaaaagcaggctttgctcgagctgatcctgtcg
gggaaccacaacgttcccggcgatctcgagcgcgtgctgatctttacccgaaccaagcat
ggcgcggaccgtgtcgtgaagaagctgtaccagcgcggcatccaggcgaatgccattcac
ggcaacaagtcgcagccgcagcgtcagcgcgcgctcgacgagttccgccggggcaaggtc
tccgtactgatcgccacggatgtggccgcgcgcgggatcgacattcccggtgtcagccac
gtcatcaattacgaacttcccaacgtgcctgaacagtacgtccaccgcatcggccgcacc
gcgcgtgccgggcgtgacggtatcgcgatcgcgttctgcggcgaggacgagcgggcgtat
ctgaaagatatccagcgcaacaccgatgcttcgctggatcgcctgccgctgcccgaaaat
ttccgcgcggtggtcgaaggggtcggcccgaccaagccggctccgcgtggggcgtcgcgg
gtgtcgcagaagaaggtgaagcccaagccgtttggcaagcgcccttccgagggcgccaat
gtgcagggcgaaagccaaagccgcagcaagcccaagcgcaagcatccgtcgcgcgcgggg
aaaccgcatcgcaccggcagcggtggccgtccgggtggcaatcgctcgcggcagcgccgc
tcgcagggataa
DBGET
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