Egibacter rhizosphaerae: ER308_09505
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Entry
ER308_09505 CDS
T05860
Name
(GenBank) RNB domain-containing ribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
erz
Egibacter rhizosphaerae
Pathway
erz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
erz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ER308_09505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
erz03019
]
ER308_09505
03016 Transfer RNA biogenesis [BR:
erz03016
]
ER308_09505
Enzymes [BR:
erz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ER308_09505
Messenger RNA biogenesis [BR:
erz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ER308_09505
Transfer RNA biogenesis [BR:
erz03016
]
Prokaryotic type
tRNA degradation factors
ER308_09505
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
QBI19764
UniProt:
A0A411YES5
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All DBs
Position
2039588..2041765
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AA seq
725 aa
AA seq
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MPEPARLSRDRAIPDVPSREVAVQVRCRFRPHRRGFGFLTPVAEDGVTETTVAVPGADGE
PVEVDRVFVPPQPARAFVADDLVLTTIELADKGATAAATELVTRPRRLLTGTTARRRGQM
VIEQDGAQGTGWITLAEPVAESLAAHEGERVVVLVVPGEGGAPVAQAVAAGPYPAGTADA
TRARAVPLVLGGAAPSVVPGGPAAVGLDPQATETTHVRITGQLAAGRRGAAAGLDRSGPV
PGENLVPMDRRDETCVTVDAFASRDLDDAVGASWDRDPDSPVWVAVHITDVAGDIGLDSP
ADQYARTLAATAYLASGPNAPMLDPSMSEGAHSLVVGQDRAVLSARFAVLPDGRVDRVTV
EPAWIRSRARLSYRAVERWLAGDGKAVELEASTQAPSVERALRDALEASRRLSVERDARL
TLEELFDQAELTPTVVNGELTLASAEPHAEAYRLIERLMVAANEAVGGWLVRHEMPALYR
AHEGIDPGRRERLRAAAELAGASLPSVEADDGDPDRVTGELLAEIDRLDREGRIESRDLL
ISTATSSTARATYEPDPHQHRGLASEAYVHFTSPLRRYADLVVHRQVRAALAGEPPPHEV
ELLRPLSDWLGARAGALARLEGRERADLWALLLEQGEIRGAETAVVTGLTPAGLRIRVPR
LGLPGFLTAEDALGLGDDERAKLETDTHGLTATSASWRVGVRTSVRYAGLDEIGRASWTR
ADTAG
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagcctgcgagactgtcgcgcgaccgtgcgatccccgacgtcccgtcccgtgag
gttgccgtgcaggttcgttgccgtttccgcccccaccgccgggggttcgggttcctgacg
cccgttgccgaggacggcgtgaccgagaccacggtcgcggtccccggcgccgatggcgaa
cccgtcgaggtcgaccgggtcttcgtgcccccacagccggcccgcgcgttcgtggccgac
gacctcgtcctcaccacgatcgagctcgccgacaagggcgcgaccgccgccgccaccgag
ctggtgacccgaccgcgccggctgctcaccggcacgaccgccagacgccgcgggcagatg
gtcatcgagcaggacggtgcgcagggcacaggctggatcaccttggccgagcccgtcgca
gaatccctcgcggcgcacgagggcgagcgggtggtggtgctcgtcgtgcccggtgagggc
ggcgcccccgtcgcacaagccgtggcagccggcccctaccccgccggcaccgcggacgcg
acccgcgcccgcgccgtcccgctcgtgctggggggcgccgccccctcggtggttcccggc
ggtccggccgcggtcggcctcgacccgcaggcgaccgaaaccacgcacgtgcgcatcacc
ggccaactggcggcagggcgacgcggtgccgccgccgggctcgaccggtcgggacccgtt
ccgggcgagaacctcgtgccgatggaccggcgcgacgagacgtgcgtgaccgtcgacgcg
ttcgcgagccgcgacctcgacgacgcggtcggcgccagctgggaccgcgatcccgacagc
ccggtctgggtcgcggtgcacatcaccgacgtggccggcgacatcgggctcgactccccc
gcggaccagtacgcccgcacactcgcggcgacggcctacctggcatccggaccgaacgcg
ccgatgctcgacccctcgatgtcggagggagcccactcgctcgtcgtcgggcaggaccgg
gccgtgctgtcggcccgcttcgcggtgctgcccgacgggcgcgtcgaccgggtcaccgtc
gagcccgcctggatccgctctcgcgcgcgactctcgtaccgtgcggtcgagcgttggctg
gctggcgacggcaaggccgtggaactcgaggcgagcacgcaggccccctcggtcgagcgg
gccctccgcgatgcgctggaggcctcccggcggctgtcggtcgagcgcgacgcgcgcctc
accctcgaggagctgttcgaccaggcggagctcacccccaccgtcgtgaacggcgagctg
acgctggcctccgccgagccccacgcggaggcctaccggctgatcgagcgcctgatggtc
gccgcgaacgaggccgtcggcggatggctcgtgcgccacgagatgccggccctctaccgc
gcgcacgaggggatcgatcccgggcggcgggagcggctgcgcgcggcagcggagctcgcg
ggggcgtcgctgccctcggtcgaggccgacgacggcgaccccgaccgggtcaccggtgaa
ctgctcgccgagatcgaccggcttgaccgcgagggacggatcgagagccgcgatctgctg
atctcgaccgcgacgtcgtcgacggcgcgtgcgacgtacgaaccggatccgcaccagcac
cgcgggctggcgtcggaggcctacgtccacttcacctcgccgctgcggcgctacgccgac
ctcgtcgtgcaccgccaggtgcgcgccgccctggcgggcgagcccccgccccacgaggtg
gagttgctgcggccgctgtcggactggctcggtgctcgcgcaggcgcgctggcccggctg
gagggcagggagcgcgcggatctgtgggccctgctcctcgagcagggggagattcgcggg
gcggagaccgcggtggtcaccgggctcactcccgcggggctgcggatccgggtgccgcgg
ctgggcctgcccgggttcctgaccgccgaggacgccctcgggctcggggacgatgagcgc
gcgaagctcgagacggacacgcacgggctcaccgcgacgagcgcgtcctggcgggtcggg
gtgcgcacgtcagtgcgctacgccggactcgacgagatcggccgcgcgagctggacccgc
gcggacacggccggatga
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