Egibacter rhizosphaerae: ER308_13320
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Entry
ER308_13320 CDS
T05860
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
erz
Egibacter rhizosphaerae
Pathway
erz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
erz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ER308_13320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
erz03021
]
ER308_13320
03400 DNA repair and recombination proteins [BR:
erz03400
]
ER308_13320
Enzymes [BR:
erz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ER308_13320
Transcription machinery [BR:
erz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ER308_13320
DNA repair and recombination proteins [BR:
erz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ER308_13320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
Golgin_A5
Motif
Other DBs
NCBI-ProteinID:
QBI20446
UniProt:
A0A411YH60
LinkDB
All DBs
Position
2848455..2852471
Genome browser
AA seq
1338 aa
AA seq
DB search
MLDVNNFDELRIGLATEHQVRMWSNGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
PPKDLEKVIYFAAYLITSVDDGQRHEDLPTLEAEVANEKKQMEQQLEVDREQLLKDLENE
LAELEEQGAKSDQVRKKRREYEKQIKDVQESTEQEVARLEEVMETFKSLEPKQLITDELL
YRELYFRFGEYFKGGMGAEAIRDLLGTLDFDQEAAELREVLGAESEKLRSGARKARSQKA
TRAVKRLKVVEAFRQTGNDPTAMVLKAVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVIN
RNNRLKRLLDLGAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGK
QGRFRQNLLGKRVDYSGRSVIVVGPQLELHQCGLPKQMALELFKPFVMKRLVDLNYAQNI
KSAKRMVERARPQVWDVLEEVIADHPVMLNRAPTLHRLGIQAFEPVLVEGKAIQIHPLVC
AAFNADFDGDQMAVHLPLSSEAQAEARVLMMSSNNILSPAHGRPLATPSQDMVLGSYYLT
FAKDADETGAAPQNGLVASAKAGETFLPSFSNPGEVEMSLDLHEVELQQWVLVRLRNQAV
RVEDNLDDELPDDAEELTPGVVRSARGVRILTTPGRVILNEALPEDMPFENRLIGKKEAG
ELVNRCADNYTRAVTAQVLDRLKDLGFRYATRAGVTVSIADVEAPPEKQEILAEHDEKAL
DVEKQFRKGIITDEERKQELRDIWTEATNLVADKMEANFDRLNPVFMMANSGARGSMTQI
RQLAAMKGLVSNPRGEIIERPIKSNFREGLSVLEYFISTHGARKGLADTALRTADSGYLT
RRLVDIAQDLIVREDDCGTRRGMPVVVGERDSQALFGRVLGKDVHYPGTEDVLMPAGTEL
TDAEIRLLRRVLVRGEHPETGEALEHRATSDAEKSVTVRTVLTCDTPEGVCVLCYGRALA
EGQLVQVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVASGEDITQGLPRVVELFEARSPKG
KAEIAHNSGVVSFEETDRGVKVTVEGDDEDAKMTVTVPNRQRLLVSDGQEIKVGEMLTGG
SIDPHEMLEVLGARETQRLLVGEVQEVYGSQGVSIHDKHIELIVRQMLRRVNVVEPGDTP
FLPGELVDRTQFADANRRVLDEGGQPGNGRQVLMGITKASLATESWLSAASFQETTRVLT
EAAIEGKKDSLIGLKENVIIGKLIPAGTGLRRYRGVRPLPTEVPEQVVPADLIEQFGADG
YDEYYEADEGWTMGEESY
NT seq
4017 nt
NT seq
+upstream
nt +downstream
nt
atgctcgacgtcaacaacttcgacgagctgcgcatcggcctcgccaccgagcaccaggtc
cgcatgtggtcgaacggcgaggtgaagaagccggagacgatcaactaccgtacgctcaag
ccggagaaggacgggctcttctgcgagaagatcttcggtcccacccgggactgggagtgc
tactgcggcaagtacaagcgggtccgcttcaagggcatcatctgcgagcgctgcggcgtc
gaggtgacccgctcgaaggtgcgccgcgagcgcatgggccacatcgaactcgccgcgccg
gtgacgcacatctggtacttcaagggcgtgccgagccggctgggctacctgctcgacctg
ccgccgaaggacctcgagaaggtcatctacttcgcggcctacctgatcacgtcggtcgac
gacgggcagcgccacgaggacctgccgacgctcgaggccgaggtcgccaacgagaagaag
cagatggagcagcagctcgaggtcgatcgcgagcagctgctcaaggacctcgagaacgag
ctcgccgagctcgaggagcagggcgcgaagtcggaccaggtccgcaagaagcgtcgcgag
tacgagaagcagatcaaggacgtccaggagtcgaccgagcaggaggtcgcgcggctcgag
gaggtcatggagaccttcaagtcgctcgagcccaagcagctcatcaccgacgagctgctc
taccgtgagctgtacttccgcttcggggagtacttcaagggcggcatgggcgccgaggcg
atccgcgacctgctcgggacgctcgacttcgaccaggaggccgccgagctgcgcgaggtg
ctcggcgccgagtcggagaagttgcgcagcggcgcccgcaaggcccgcagccagaaggcc
acccgcgcggtcaagcggctcaaggtcgtcgaggccttccgccagacgggcaacgacccg
accgcgatggtcctcaaggccgtcccggtcatcccgccggatctgcgcccgatggtgcag
ctcgacgggggccgctttgcgacgagcgacctgaacgacctctaccgccgcgtcatcaac
cgcaacaaccgcctcaagcggctcctcgacctcggtgcgcccgagatcatcgtgaacaac
gagaagcggatgctgcaggaggcggtggacgccctgttcgacaacgggcgtcgcggccgg
ccggtcaccgggccgggcaaccgtcctctcaagtcgctcagcgacatgctcaagggcaag
cagggccggttccgccagaacctgctcggcaagcgcgtcgactactccggccggtcggtg
atcgtcgtcggtccgcagctcgagctgcaccagtgtggcctgccgaagcagatggcgctc
gagctgttcaagccgttcgtgatgaagcggctggtcgacctcaactacgcgcagaacatc
aagtcggccaagcgcatggtcgagcgggcccgtccgcaggtctgggacgtgctcgaggag
gtcatcgccgaccacccggtgatgctcaaccgcgcgccgacgttgcaccgcctcggcatc
caggccttcgagccggtcctcgtcgagggcaaggccatccagatccacccgctcgtctgc
gcggcgttcaacgccgacttcgacggggaccagatggcggtgcacctgccgctgtccagc
gaggcccaggccgaggcccgggtgctcatgatgtcgtcgaacaacatcctctcgccggcc
cacgggcgcccgctggcgacgccctcgcaggacatggtgctgggcagttactacctcacc
tttgccaaggacgcggacgagaccggggcggccccgcagaacggcctggtggcctcggcc
aaggccggcgagacgttcctgccgtcgttctcgaaccccggtgaggtcgagatgtccctc
gacctgcacgaggtggagttgcagcagtgggtcctcgtgcgcctgcgtaaccaggccgtg
cgggtcgaggacaacctcgacgacgaacttccggacgacgccgaggagctcacgcccggc
gtcgtgcgctcggcccgcggggtccgcatcctcaccacgcccggccgcgtgatcctcaac
gaggcgctgccggaggacatgcccttcgagaaccggctgatcggcaagaaggaggccggt
gagctcgtcaaccgctgcgcggacaactacacgcgtgccgtgaccgcccaggtgctcgac
cggctcaaggatctcggcttccgctacgcgaccagggccggcgtcaccgtgtcgatcgcg
gacgtcgaggcgccccccgagaagcaggagatcctcgccgagcacgacgagaaggcgctc
gacgtcgagaagcagttccgcaagggcatcatcaccgacgaggagcgcaagcaggagctg
cgggacatctggacggaggcgaccaacctcgtcgccgacaagatggaggcgaacttcgac
cgcctgaacccggtgttcatgatggcgaactccggggcccgcgggtcgatgacccagatc
cggcagctcgccgcgatgaagggcctcgtgtcgaacccgcgcggcgagatcatcgaacgc
cccatcaagtcgaacttccgtgaggggctgtccgtgctcgagtacttcatctcgacgcac
ggggctcggaagggcctggccgacacggcactgcgcaccgccgactcgggctacctcacc
cgccggctggtcgacatcgcgcaggacctgatcgtccgcgaggacgactgcgggacccgc
cgcggcatgccggtcgtcgtcggcgagcgcgacagccaggcactgttcgggcgggtgctc
ggcaaggacgtgcactatccgggcaccgaggacgtgctcatgccggccggcaccgagctc
accgacgccgagatccggctgctgcgccgcgtcctcgtccgcggggagcaccccgagacc
ggcgaggcgctggagcaccgggcgaccagcgacgcggagaagagcgtcacggtccggacc
gtgctcacctgcgacacccccgaaggcgtgtgcgtgctgtgctatggccgcgcgctcgcc
gagggccagctcgtgcaggtcggcgaggcggtcggcatcatcgccgcccagtcgatcggc
gagcccggcacgcagctgacgatgcggaccttccacaccggcggggtcgcgagcggggag
gacatcacccagggtctgccccgtgtggtggagctgttcgaggcccgcagcccgaagggg
aaggccgagatcgcccacaactccggcgtcgtgagcttcgaggagaccgatcggggcgtg
aaggtcaccgtcgagggcgacgacgaggacgccaagatgacggtgacggtgccgaaccgt
cagcgcctgctcgtctcggacggtcaggagatcaaggtcggcgagatgctgaccgggggc
tcgatcgatccccacgagatgctcgaggtgctcggcgcccgcgagacccagcgcctgctc
gtcggcgaggtgcaggaggtctacggctcgcagggcgtgtcgatccacgacaagcacatc
gagctgatcgtccgtcagatgctgcgccgggtgaacgtcgtcgagccgggcgacacgccc
ttcctgccgggagagctcgtggaccgcacgcagttcgccgacgcgaaccgcagggtcctc
gacgagggcgggcaacccggcaacggtcgtcaggtgctcatgggcatcaccaaggcgtcg
ctggcgaccgagtcgtggctgtccgcggcctcgttccaggagaccacccgcgtgctcacc
gaggccgcgatcgaggggaagaaggactccctcatcgggctgaaggagaacgtgatcatc
gggaagctcatccccgccggcaccggactgcggcgctaccgaggggtgcggcccctgccg
accgaggtgcccgagcaggtcgtgcccgccgacctcatcgagcagttcggcgccgacggg
tacgacgagtactacgaggccgacgaggggtggaccatgggcgaggagagctactag
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