KEGG   Egibacter rhizosphaerae: ER308_18020
Entry
ER308_18020       CDS       T05860                                 
Symbol
rny
Name
(GenBank) ribonuclease Y
  KO
K18682  ribonucrease Y [EC:3.1.-.-]
Organism
erz  Egibacter rhizosphaerae
Pathway
erz03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:erz00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ER308_18020 (rny)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:erz03019]
    ER308_18020 (rny)
Messenger RNA biogenesis [BR:erz03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     ER308_18020 (rny)
SSDB
Motif
Pfam: RNase_Y_N HD KH_1 HDOD KH_PNO1_2nd KH_KhpA-B KH_NusA_2nd G-gamma ZT_dimer dUTPase
Other DBs
NCBI-ProteinID: QBI21280
UniProt: A0A411YJ75
LinkDB
Position
3916749..3918164
AA seq 471 aa
MEATATAWALATVVALATAIVVLTVDRALARRRKAREHGGLDQREQRLLQREETLETKAS
TLELREANLLERERTLAAAQADLEDERVTVRKRLEELADYTADEARQDLIEEVEAQARAD
ARELVRDVEQRTRQEAGRRGQEILATAVQRVASSSTAAVATSTVSLPDEDMKGRIIGRDG
RNIRAFQQVTGVDVIVDDSPGVVTLSSFDGVRREIARRTLEALVEDGRIQPASIENAFEK
AADDVQKFVLAAGEEAIREARVEDDVPDELVRLLGELEFRSSYGQNVRLHSIECALIAGV
MAEELGRDGTVARRAALLHDIGKALTHKVEGSHAAVGAELSRRVGESEPVCHAIAAHHDE
VEPQTVEAALVQAADAASAARPGARRQAWEQYVSRLNSIEDICQSFDGVREVHALQSGRE
VRVMVAPDAIDDTQARSLTSEITRKLEAEARYPGQINVTVIREFRVRGTAK
NT seq 1416 nt   +upstreamnt  +downstreamnt
atggaggccaccgcgacggcgtgggcattggccacggtcgtcgcgctggccacggcgatc
gtcgtgctgacggtcgatcgcgcgttggcgcgccgtcgtaaagcccgtgagcacgggggc
ctcgaccagcgagagcagcgcttgctccaacgcgaggagaccctcgagacgaaggcctcg
accctcgagctccgggaggccaatctgctcgaacgcgagcggaccctcgcggcggctcag
gccgacctcgaggacgagcgggtcaccgtgcgaaagcggctcgaggagctcgccgactac
accgctgacgaggcgcgccaggacctcatcgaggaggtcgaggcacaagcccgtgccgat
gcgcgggagctcgtccgtgacgtggagcaacgcacccgccaggaggcgggtcgacgcggg
caggagatcctcgcgaccgccgtgcagcgcgtggcctcgtcgtcgaccgctgcggtggcg
acgagcacggtcagcctgcccgacgaggacatgaagggtcggatcatcgggcgggatggt
cgcaacattcgcgcgttccagcaggtgaccggcgtcgacgtgatcgtcgacgacagcccg
ggggtcgtgacgctgtcgagcttcgacggggtgcgccgcgagatcgcgcggcggacgctc
gaggcgttggtggaggatgggcgcatccagcccgcgagcatcgagaacgccttcgagaag
gcggcggacgacgtgcagaagttcgtgctcgccgcgggcgaggaggcgatcagggaggcg
cgggtcgaggatgacgtgccggacgaactcgttcggctcctcggcgagttggagttccgc
agcagctacgggcagaacgtgcgcctgcacagcatcgagtgcgcgctgatcgcgggagtg
atggccgaggagctcggtcgggacggcaccgtcgcgcggcgcgcggccctattgcacgac
atcggcaaggccctcacgcacaaggtcgagggaagccatgcggccgtcggtgctgagctc
tcgaggcgcgtgggtgagtccgagccggtctgtcacgcgatcgcggcccaccacgacgag
gtcgagccccagaccgtcgaggccgccctcgtgcaggccgctgacgccgcgtccgctgcc
cggccgggggctcgtcgccaggcgtgggagcagtacgtcagtcggctcaactcgatcgag
gacatctgccagtcgttcgatggtgtccgcgaggtccatgcgctccagtcgggccgtgag
gtgcgtgtcatggtcgcgccggacgcgatcgatgatacgcaggcgaggtcgttgacctcc
gagatcacccgcaagctcgaggccgaggcgcgctacccggggcagatcaacgtgacggtg
atccgcgagttccgcgtgcgcgggaccgccaagtag

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