Egibacter rhizosphaerae: ER308_18020
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Entry
ER308_18020 CDS
T05860
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
erz
Egibacter rhizosphaerae
Pathway
erz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
erz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ER308_18020 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
erz03019
]
ER308_18020 (rny)
Messenger RNA biogenesis [BR:
erz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ER308_18020 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_PNO1_2nd
KH_KhpA-B
KH_NusA_2nd
G-gamma
ZT_dimer
dUTPase
Motif
Other DBs
NCBI-ProteinID:
QBI21280
UniProt:
A0A411YJ75
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All DBs
Position
3916749..3918164
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AA seq
471 aa
AA seq
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MEATATAWALATVVALATAIVVLTVDRALARRRKAREHGGLDQREQRLLQREETLETKAS
TLELREANLLERERTLAAAQADLEDERVTVRKRLEELADYTADEARQDLIEEVEAQARAD
ARELVRDVEQRTRQEAGRRGQEILATAVQRVASSSTAAVATSTVSLPDEDMKGRIIGRDG
RNIRAFQQVTGVDVIVDDSPGVVTLSSFDGVRREIARRTLEALVEDGRIQPASIENAFEK
AADDVQKFVLAAGEEAIREARVEDDVPDELVRLLGELEFRSSYGQNVRLHSIECALIAGV
MAEELGRDGTVARRAALLHDIGKALTHKVEGSHAAVGAELSRRVGESEPVCHAIAAHHDE
VEPQTVEAALVQAADAASAARPGARRQAWEQYVSRLNSIEDICQSFDGVREVHALQSGRE
VRVMVAPDAIDDTQARSLTSEITRKLEAEARYPGQINVTVIREFRVRGTAK
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atggaggccaccgcgacggcgtgggcattggccacggtcgtcgcgctggccacggcgatc
gtcgtgctgacggtcgatcgcgcgttggcgcgccgtcgtaaagcccgtgagcacgggggc
ctcgaccagcgagagcagcgcttgctccaacgcgaggagaccctcgagacgaaggcctcg
accctcgagctccgggaggccaatctgctcgaacgcgagcggaccctcgcggcggctcag
gccgacctcgaggacgagcgggtcaccgtgcgaaagcggctcgaggagctcgccgactac
accgctgacgaggcgcgccaggacctcatcgaggaggtcgaggcacaagcccgtgccgat
gcgcgggagctcgtccgtgacgtggagcaacgcacccgccaggaggcgggtcgacgcggg
caggagatcctcgcgaccgccgtgcagcgcgtggcctcgtcgtcgaccgctgcggtggcg
acgagcacggtcagcctgcccgacgaggacatgaagggtcggatcatcgggcgggatggt
cgcaacattcgcgcgttccagcaggtgaccggcgtcgacgtgatcgtcgacgacagcccg
ggggtcgtgacgctgtcgagcttcgacggggtgcgccgcgagatcgcgcggcggacgctc
gaggcgttggtggaggatgggcgcatccagcccgcgagcatcgagaacgccttcgagaag
gcggcggacgacgtgcagaagttcgtgctcgccgcgggcgaggaggcgatcagggaggcg
cgggtcgaggatgacgtgccggacgaactcgttcggctcctcggcgagttggagttccgc
agcagctacgggcagaacgtgcgcctgcacagcatcgagtgcgcgctgatcgcgggagtg
atggccgaggagctcggtcgggacggcaccgtcgcgcggcgcgcggccctattgcacgac
atcggcaaggccctcacgcacaaggtcgagggaagccatgcggccgtcggtgctgagctc
tcgaggcgcgtgggtgagtccgagccggtctgtcacgcgatcgcggcccaccacgacgag
gtcgagccccagaccgtcgaggccgccctcgtgcaggccgctgacgccgcgtccgctgcc
cggccgggggctcgtcgccaggcgtgggagcagtacgtcagtcggctcaactcgatcgag
gacatctgccagtcgttcgatggtgtccgcgaggtccatgcgctccagtcgggccgtgag
gtgcgtgtcatggtcgcgccggacgcgatcgatgatacgcaggcgaggtcgttgacctcc
gagatcacccgcaagctcgaggccgaggcgcgctacccggggcagatcaacgtgacggtg
atccgcgagttccgcgtgcgcgggaccgccaagtag
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