Enterobacter lignolyticus SCF1: Entcl_0456
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Entry
Entcl_0456 CDS
T01342
Name
(GenBank) diguanylate cyclase/phosphodiesterase
KO
K18765
RNase E specificity factor CsrD
Organism
esc
Enterobacter lignolyticus SCF1
Brite
KEGG Orthology (KO) [BR:
esc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
esc03019
]
Entcl_0456
Messenger RNA biogenesis [BR:
esc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Entcl_0456
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
GAPES4
ERMP1-TM
Motif
Other DBs
NCBI-ProteinID:
ADO46734
UniProt:
E3GCP1
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Position
474686..476626
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AA seq
646 aa
AA seq
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MRLTTKFSAFMTLLTGLAIFVTLIGSSLSFYNGIQYKLEYRVRAVATVIDSRLLTTSFDK
IDNQLDELLVPVDIVRMDAVVNDKTVFSHSRASSYRPMGSSYQYREVSVPLIKHPGMTLH
MVYQDPMVNYFHSLLTTAPLTVAIGFMVLVIFFSVRWLRNQLSGQELLELRSTRILNGER
GSQVRGNVHEWPARTSSALDALLSEIQFASEQRSRMDTLIRSYAAQDTKTGLNNRAFFDN
QLATLLEDQEKVGAHGIVMLIRLPEFDLVRDNWGRAAAEEHFFTIINLLSTFMMRYPGAL
LARYHRSDFAVLLPHRTLKEADSIAGQLLKALDALPASKILDSDDMMHIGVCAWRSGQTP
LQVMEHAEAAVRNAVLQGSNSWAVYDDTLPEKGRGNVRWRTLIEQMLSRGGPRFYQKPAV
MRDGYVHHRELMCRLFDGKEEVSAAEYMPMVLEFGLAEEYDRLQITRLLPFLTFWPEETL
ALQVTAEALIRPRFQRWLRDTLMQCEKAQRKRIIFELAEADVCQHISRLQPVMRLVNALG
VRVAVIQAGFTLVGTGWIKQLTVEIIKLHPGIVRNIEKRSENQLLVQSLVEACKGTPTRV
FATGLRSRNEWQVLAECGVSGGQGEFFAASQPLDTNVKKYSQRYSV
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgcgattaacgacgaaattttcagcctttatgacgttgctgaccggtctggctatcttt
gtcacgcttatcggcagttcattgagcttttataacggtattcagtacaagctagagtac
cgcgtccgcgccgttgcgaccgttatcgattcccgtctgttgaccacctcttttgataag
atagacaaccagctggacgagctgctggtgccggttgacatcgtccgtatggatgctgtc
gtcaacgacaaaaccgtattcagccattcgcgcgccagcagctatcggccgatgggcagc
agctaccaataccgtgaagtctccgtcccgttgataaaacaccctggtatgacccttcat
atggtgtatcaggatccgatggtgaactactttcattcgttgttaaccaccgcgccgtta
acggtcgctatcggctttatggtgctggtgatcttcttttccgtacgctggctgcgtaac
cagctttccggccaggagctgctggagctgcgctcaacgcgcattcttaacggtgaacgc
ggcagccaggtgcggggcaacgtgcatgagtggccggcccgtaccagcagcgcgctggat
gccctgttgtctgaaattcagttcgccagcgaacagcgcagccgcatggacacgctgatt
cgctcctacgccgcgcaggacaccaaaaccggcctgaacaaccgcgcgttcttcgataac
cagctggcgaccttgcttgaggaccaggaaaaagtcggcgcgcacggcattgtgatgctg
attcgcctgccggagtttgatctggtccgcgacaactgggggcgggcggccgcggaagaa
cacttctttaccattattaatctgctctcgacctttatgatgcgctatcccggcgcgctg
ctggcgcgttaccaccgcagcgacttcgcggtattgctgccgcatcgcaccttaaaagag
gccgacagcatcgcgggccagctgcttaaagcgctggatgcgctgccggccagtaaaatt
ctcgacagcgacgacatgatgcacatcggcgtctgcgcctggcgcagcgggcagactccg
ctgcaggttatggagcatgccgaagccgctgtacgtaacgcggtcctgcagggcagcaac
agctgggccgtatacgacgacaccctgcccgagaaagggcgcggcaacgtgcgctggcgc
acgcttatcgaacagatgctcagccgcggcggtccgcgtttttatcagaagcccgccgtc
atgcgcgacggatacgtccaccatcgcgagctgatgtgccgcctttttgacggtaaagaa
gaggtcagcgcggcggagtatatgccgatggtgctggagttcggtctggccgaagagtat
gaccgcttgcagataaccaggctcctgccgttcctgacgttctggccggaggagaccctc
gcgctacaggtcacggcagaggcgttgattcgccctcgcttccagcgctggctgcgtgat
acgttaatgcagtgtgaaaaagcgcagcgtaaacggattatttttgaacttgcagaggcc
gatgtttgtcaacatatcagccgtttgcagcccgtgatgcgtttagtcaatgcgttaggg
gtgagagttgcggtgatccaggcgggtttcacgctggtcgggacgggctggatcaagcag
ttgacggtggagatcatcaagctccatccggggatcgtgcgtaatattgagaaacgtagt
gaaaaccagctgctggtgcaaagcctggtcgaggcctgcaaaggcaccccgacccgggta
ttcgccaccggtttacgtagtcgaaacgaatggcaggtgcttgctgagtgtggtgtctct
ggtggtcagggcgaattttttgccgcgtcacaaccacttgacacgaacgtgaaaaaatat
tcgcaaagatactctgtttga
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