Enterobacter lignolyticus SCF1: Entcl_2708
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Entry
Entcl_2708 CDS
T01342
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
esc
Enterobacter lignolyticus SCF1
Pathway
esc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
esc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Entcl_2708
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
esc03019
]
Entcl_2708
03009 Ribosome biogenesis [BR:
esc03009
]
Entcl_2708
Enzymes [BR:
esc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Entcl_2708
Messenger RNA biogenesis [BR:
esc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Entcl_2708
Ribosome biogenesis [BR:
esc03009
]
Prokaryotic type
rRNA processing factors
Entcl_2708
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
ADO48956
UniProt:
E3GC70
LinkDB
All DBs
Position
2860471..2863626
Genome browser
AA seq
1051 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYSSHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLQLPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKRDAVSAIESRQGGVRCIIVPNEQME
TPHYSVLRVRKGEETQTLSYLLPKLHEEEMALPSDEEPAERKRPEQPALATFVMPDTPPA
PDVETAAVEAPVKVAAPVAAAATVAEPGLVSRFFSALKRMFSDSDAAPVEAQPEEKKEEK
QERQQDRRKPRQNNRRDRNDRNDRRDRNERGDRDRNDSRAENTEAREENRRNRREKPQQN
AEPREARQPQNVVEDADKAKSRDEQQPRRERSRRRNDEKRQNQQEVKALSREEQPVQEAE
QEERSQPVARRKPRQLSQKVRIASAADSVETTEAVVAAEAVAAPRTELAKVDLPAVVEMP
VEQDDNGEARDTAGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLEFACASPEMAS
GKVWVSYPVARTQEQVAEEFHEQEDVQHVETVAPVAADIAAAEPIVEAPADVIEAQVVET
ARVVEEAAPVVEHAQAVVAEEAVVAVEATAAEDAAPAPVEAHVEPVVAAPVVVETAEEAP
AVAPQPAEAVVEAAPEVSVAATPVAQPAVTLPHPHATAPMTRAPAPEYVPEAPRHSDWVR
PAFAFDGKGAAGGHSASNRAAAEPARPQPVE
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaggaagagttgcgtgtcgcccttgttgat
gggcagcgtctgtacgatctggacattgaaagcccaggacatgaacagaaaaaagcgaac
atctacaaaggcaaaattacccgcattgaacccagccttgaagccgcatttgttgactac
ggtgccgagcgtcatggcttccttcccctcaaagaaatcgcccgcgaatacttccccgct
aattattcttcccatggtcgcccgaacatcaaagatgtgctgcgcgaaggtcaggaagtg
attgttcagattgataaagaagaacgcggcaacaaaggcgccgcgctgaccacctttatc
agcctggcgggcagctatctggtgctgatgccgaataacccacgcgctggcggtatttca
cgccgtatcgagggcgacgaccgcaccgagctgaaagaagcgctggcaagcctgcagctg
ccggacggcatgggcctcatcgtgcgtaccgcaggcgtcggcaaatccgccgaagcgctg
cagtgggacctgagcttccgcctgaagcactgggaagcgattcagaaagccgcagaaagc
cgcccggcgccgttcctgattcatcaggaaagcaacgttatcgtgcgcgccttccgtgac
tatctgcgtcaggatatcggcgaaatcctcatcgacaacccgaaagtgcttgagctggct
cgccagcacatcgcggcgctgggtcgtccggatttcagcagcaaaattaagctctacact
ggtgaaatcccgctgttcagccactatcagattgagtcgcagatcgaatccgccttccag
cgcgaagtgcgtctgccgtccggcggctccatcgttatcgacagcaccgaagcgctgacc
gctatcgatatcaactccgcgcgcgcgacccgcggcggcgacatcgaagaaaccgcgttc
aacaccaacctggaagcggcagacgaaattgcccgccagctgcgcctgcgcgacctcggc
ggccttatcgttatcgacttcatcgatatgacgccggttcgccaccagcgtgcggtggaa
aaccgcctgcgcgaagccgtgcgccaggaccgcgcgcgcattcagattagccatatttcc
cgcttcggcctgctggaaatgtcgcgtcagcgtctgagcccgtcgctgggcgagtccagc
catcacgtttgtcctcgctgtagcggcaccggcacggttcgtgacaacgaatccctgtcg
ctctctattctgcgtctgattgaagaagaagcgctgaaagagaacaccaaagaagttcac
gccattgtaccggtgccgatcgcctcttacctgctgaacgaaaaacgtgatgccgtaagc
gcaatcgaatcccgccagggcggcgttcgctgcattatcgtgccgaacgaacagatggaa
accccgcactactccgtactgcgcgtgcgcaaaggcgaagagacgcagacgctgagctat
ctgctgccgaagctgcacgaagaagagatggcgctgccgtctgatgaagagcctgccgag
cgcaaacgccctgagcagccggcgctggccaccttcgtgatgccggataccccgccagct
cctgacgttgaaaccgccgctgttgaagcgccggtgaaagtagccgcgccggtcgccgca
gccgcgactgtcgccgaaccgggtctggtctcccgcttcttctccgcgctgaagcgcatg
ttcagcgacagcgacgctgcgccggtagaagcacagccggaagagaagaaagaagagaaa
caggaacgtcagcaggatcgtcgtaagccgcgtcagaataaccgtcgcgaccgtaacgac
cgtaatgaccgccgtgaccgcaacgagcgcggcgatcgcgatcgtaacgacagccgtgcc
gagaatacggaagcgcgcgaagaaaaccgccgtaaccgtcgcgaaaaaccgcagcagaac
gccgagccgcgtgaagcccgtcagccgcagaacgtcgtggaagacgccgataaggcgaaa
tcccgcgacgagcagcagccgcgtcgtgagcgcagccgccgccgtaatgacgaaaaacgt
cagaaccagcaggaagtgaaagcgctgtcgcgcgaagagcagccggttcaggaagcggaa
caggaagaacgttctcagccggtagcccgtcgcaagccgcgccagctgtcacagaaagtg
cgcattgcgtccgccgccgacagcgtcgaaaccacggaagctgttgttgccgctgaagca
gttgctgcgccgcgtactgagctggcaaaagtcgatctgcccgcggttgtcgagatgccg
gttgagcaggacgacaacggcgaagcgcgtgataccgccggtatgccgcgtcgctcacgc
cgttctccgcgccacctgcgcgtcagcggccagcgccgtcgtcgttaccgtgacgagcgt
tacccgacccagtcgccgatgccgctggagttcgcctgcgcatcgccggaaatggcgtca
ggtaaagtgtgggtaagctacccggttgcccgtactcaggagcaggttgccgaagagttc
cacgagcaggaagacgttcagcacgttgagaccgtcgcgcctgttgccgctgatatcgcc
gccgcagaaccgatcgtcgaagcgccagctgacgtaattgaagcgcaggttgtcgaaacc
gcgcgagtggtggaagaagcggcgccggtcgttgaacacgcgcaggctgtagtggcagag
gaagccgtcgttgccgtcgaggcgacagcggctgaagacgccgcgccagcgcctgtcgaa
gcgcacgttgaacctgttgtcgcagcgcctgtcgttgtcgaaaccgcagaagaagccccg
gctgtcgcaccgcaaccggcggaggctgtggttgaagccgcaccggaagtgagcgttgca
gccacaccggttgcccagccagcggtaactctgccgcatccgcacgcaacggccccgatg
acccgcgcgccggcgccggagtatgtcccggaagctccgcgtcacagcgattgggtacgt
cctgccttcgcgttcgacggtaaaggcgcagccggcggccatagcgccagcaaccgcgct
gccgcagagcctgctcgcccccaaccggttgagtaa
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