Enterobacter lignolyticus SCF1: Entcl_3979
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Entry
Entcl_3979 CDS
T01342
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
esc
Enterobacter lignolyticus SCF1
Pathway
esc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
esc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Entcl_3979
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
esc03019
]
Entcl_3979
03016 Transfer RNA biogenesis [BR:
esc03016
]
Entcl_3979
Enzymes [BR:
esc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Entcl_3979
Messenger RNA biogenesis [BR:
esc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Entcl_3979
Transfer RNA biogenesis [BR:
esc03016
]
Prokaryotic type
tRNA degradation factors
Entcl_3979
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
TFIIE_beta
Rho_RNA_bind
MetOD2
Motif
Other DBs
NCBI-ProteinID:
ADO50216
UniProt:
E3GDB1
LinkDB
All DBs
Position
complement(4275228..4277663)
Genome browser
AA seq
811 aa
AA seq
DB search
MSQDPFLEREAEKYANPIPSREFILDYIAKREKPVSRDELAVELKIEGEEQQEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKMCIH
GDQILAQPLGADRKGRREARVVRILVPKTSQIVGRYFTDAGVGFVVPDDSRLSFDILIPP
DEIMGARMGYVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDMALRTHEIPYTWPPA
VEKQIAGLKEEVPEAAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPPTPLDAEARNRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS
SKGRLTGYKFYEAVMSSHARLTYTKVWHMLQGDQELREQYAPLVKHIEELHNLYKVLDAA
RAERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFMEKAQEP
ALFRIHDKPSTEAITAFRSVLSELGLELPGGNRPEPRDYAELLDSIADRPDHEMLQTMLL
RSMKQAVYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRGIKYLLAKEQGHKGNSTETG
GWHYSMEEMLQLGEHCSMTERRADEATREVADWLKCDFMQDQVGNVFPGVIASVTGFGFF
VRLDDLFIDGLVHVSTLDNDYYRFDQVGQRLIGESGGQTYRLGDRVEVRVEAVSMDERKI
DFTLISSERGPRNVGKTTREKAKKPGGGKPAGKARRQTGKKVNFEPDSAFRSEKGKGKVK
KEKKAKKPSAKTLKIAAATKAKRAAKKNVAG
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatcctttcctggaacgcgaagcagaaaaatacgcgaatcctatcccgagc
cgggaatttatcctcgattacattgcgaaacgcgaaaaaccggtcagccgcgacgagctg
gccgttgagctgaagattgaaggcgaagagcagcaggaagcgctgcgccgtcgcctgcgc
gccatggagcgcgatgggcagctggtcttcacccgccgccagtgctatgcgctgccggag
cgtctcgatctgctgaaggggaccgtcatcggccatcgcgacggctatggttttctgcgc
gtagaaggccgaaaagacgacctgtatctgtcgtcagaacagatgaaaatgtgtattcat
ggcgatcagatcctggcgcagccgctgggcgccgatcgtaaaggccgccgcgaagcgcgc
gtggtgcgcattctggtaccaaaaaccagccagattgtcggccgctacttcaccgacgct
ggcgtcggctttgtggtgccggacgacagccgcctgagcttcgatatcctgatcccgccg
gatgaaatcatgggcgcgcggatgggctatgtggtggtggtcgagctgacccagcgtccg
acccgccgcaccaaggctgtcggtaaaatcgtcgaagtgctcggcgataatatgggtacc
ggcatggccgtggatatggcgttgcgcacccacgagatcccgtatacctggccgccggcg
gtggaaaaacagatcgccggtctgaaagaagaggtgccggaagcggcgaaagccgggcgc
gtggatctgcgcgatctgcctctggtgaccatcgacggtgaagacgcgcgcgacttcgat
gacgcggtctactgcgagaaaaaacgcggcggcggctggcgcctgtgggtcgccattgcc
gacgtcagctattacgttcgtccgccgaccccgctggacgcagaggcccgcaaccgcggc
acctcggtgtacttcccgtcccaggtcgtgccgatgctgccggaagtgctctctaacggc
ctgtgttcgctgaacccgcaggtcgacaggctgtgcatggtctgcgagatgaccgtctcc
tctaaagggcgcctgaccggttacaaattctatgaagcggtgatgagctcccatgcgcgt
ctgacctacaccaaagtgtggcacatgctgcagggcgatcaggagctgcgcgagcagtat
gcgccgctggtaaaacacatcgaagagctgcacaacctctacaaagtgctggatgccgca
cgcgctgaacgcggcggtatctcctttgaaagcgaagaagcgaagtttatcttcaacgcc
gagcgccgcattgagcgcattgagcagacgcagcgtaacgatgcgcataagctgattgaa
gagtgcatgatcctcgccaatatctcggcggcgcgcttcatggagaaggcgcaggagcct
gcgctgttccgtatccacgacaaaccgagcaccgaagcgattaccgcgttccgctcggtg
ctgtccgagctggggctggagctgccgggcggcaacaggccggagccgcgtgattatgcc
gagctgctcgactccatcgccgatcgtccggaccacgagatgctgcaaaccatgctgctg
cgctccatgaagcaggcggtgtacgacccggaaaaccgcggccacttcggcttggcgctg
cagtcatacgctcactttacctcgccgatccgccgctatccggacctgtcgctgcaccgt
ggcatcaaatatctgctggcgaaagagcagggacataaaggcaattcgaccgaaaccggc
ggctggcactacagcatggaagagatgctgcagctcggcgagcactgttcgatgaccgag
cgccgcgccgatgaggcgacccgcgaagtggcggactggctgaagtgcgacttcatgcag
gatcaggtcgggaacgtgttcccgggcgtcatcgcaagcgtcaccggctttggtttcttc
gtgcgcctcgacgacctgtttatcgacggtctggtgcatgtctccaccctggataacgac
tactaccgctttgaccaggtcggccagcggctgatcggcgaatcgggcggccagacctat
cgtctgggcgaccgcgtcgaggttcgtgtggaggcggtgagcatggacgagcgtaaaatc
gatttcacgctcatctccagcgagcgcggcccgcgcaacgtgggtaaaaccacgcgcgag
aaagcgaagaagcccggcggcggtaagccggcaggcaaagcgcgccgccagacgggtaaa
aaggtgaatttcgagccggacagcgcctttcgcagcgaaaagggcaaaggcaaggtgaag
aaagagaaaaaagccaaaaagccgtcggcgaaaacgcttaaaatcgccgcggcgaccaaa
gcgaaacgcgcagcgaagaaaaacgtcgccgggtaa
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