Enterobacter lignolyticus SCF1: Entcl_4176
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Entry
Entcl_4176 CDS
T01342
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
esc
Enterobacter lignolyticus SCF1
Pathway
esc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
esc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Entcl_4176
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
esc03021
]
Entcl_4176
03400 DNA repair and recombination proteins [BR:
esc03400
]
Entcl_4176
Enzymes [BR:
esc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Entcl_4176
Transcription machinery [BR:
esc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Entcl_4176
DNA repair and recombination proteins [BR:
esc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Entcl_4176
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
LPD39
Motif
Other DBs
NCBI-ProteinID:
ADO50409
UniProt:
E3G360
LinkDB
All DBs
Position
complement(4504650..4508873)
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERNQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEYEKDENDEFVAKTSLKDTTVGRAILWMIVPKGLPFSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINREGKEEQQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTLEGITMTPVIEGGDVKEPLRDRVL
GRVTAEDVLKPGTADILVPRNTLLHEHWCDLLEANSVDSVKVRSVVSCDTDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKL
SNAKSVVNSAGKLVVTSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGEQVAGGETVANW
DPHTMPVITEVSGFIRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTTGGKDLRPALKI
VDANGDDVLIPGTDMPAQYFLPGKAIVQLEDGIQISSGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE
GERVERGDVVSDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIVNAGSSEFLEGEQVEYSRVKIANRDLEADGKIGATFARDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRIRRRAAGEAPA
APQVSAEEASASLAELLNAGLGGSDNE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcgcaaactaaaaccgaagagtttgatgcgatc
aaaattgctctggcgtcgccagacatgatccgttcatggtctttcggtgaagttaaaaag
ccggaaaccattaactaccgtacgttcaagcctgagcgtgacggccttttctgcgcccgt
atctttgggccggtaaaagactacgagtgcctgtgcggtaagtacaagcgcctgaaacac
cgtggtgttatctgtgagaagtgcggcgttgaagtgacccagactaaagtgcgtcgtgag
cgcatgggccacatcgagctggcgtctccgactgcccacatctggttcctgaaatcgctg
ccgtcccgtatcggtctgctgctcgatatgccgctgcgcgatatcgaacgcgtactgtac
ttcgaatcctatgtggttatcgaaggcggtatgaccaacctggaacgcaaccagatcctg
accgaagagcagtatctggacgcgctggaagagttcggtgacgaattcgacgcgaagatg
ggcgccgaagctattcaggccctgctgaagagcatggacctggagcaggaatgcgaacag
ctgcgtgaagagctgaacgaaaccaactccgaaaccaagcgtaaaaagctgaccaagcgc
atcaagctgctggaagcgttcgtacagtccggcaacaagccggagtggatgatcctgacc
gttctgccggttctgccgccagatctgcgtccgctggttccgctggatggcggtcgtttc
gcaacgtccgatctgaacgatctgtatcgtcgcgtgatcaaccgtaacaaccgtctgaag
cgtctgctggatctggccgcgccggacatcatcgtacgcaacgaaaaacgtatgctgcag
gaagcggtcgacgccctgctggataacggtcgtcgcggtcgtgcgatcaccggttctaac
aagcgtccgctgaaatctttggccgatatgatcaaaggtaagcagggtcgtttccgtcag
aacctgctcggtaagcgcgttgactactccggtcgttctgttatcaccgtaggtccatac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggcactggagctgttcaaaccgttc
atctacggcaagctggaactgcgtggcctcgccaccaccatcaaagccgcgaagaaaatg
gttgagcgtgaagaagctgtcgtttgggatatcctggacgaagtgatccgcgaacacccg
gtactgctgaaccgtgcaccaacactgcaccgtctgggtattcaggcatttgaaccagta
ctgatcgaaggtaaagctatccagctgcacccgctggtttgtgcggcatataacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctgacgctggaagcccagctggaagcg
cgtgcgctgatgatgtctactaacaacatcctgtccccggcgaacggcgaacctatcatc
gttccgtctcaggacgttgtactgggtctgtactacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgactggcccgaaagaagctgagcgtatttatcgcgctggc
ctggcctctctgcatgcgcgcgttaaagtgcgtatcaccgaatacgaaaaagatgaaaac
gacgaattcgttgcgaaaaccagcctgaaagacacgaccgttggccgtgccattctgtgg
atgatcgtaccgaaaggtctgcctttctccatcgtcaaccaggcgctgggcaagaaagcc
atctccaaaatgctgaacacctgttaccgcattctggggctgaagccgaccgttatcttc
gctgaccagaccatgtacaccggctttgcttatgcagcgcgttcaggtgcatcggttggt
atcgatgacatggtcatcccggagaagaaacacgagatcatctctgaagcggaagctgaa
gttgctgagatccaggagcagttccagtctggtctggtcaccgcaggcgaacgctacaac
aaagttatcgatatctgggctgcggcgaacgatcgtgtatccaaagcgatgatggataac
ctgcagaccgaaacggttatcaaccgtgaaggcaaagaagaacagcaggtttccttcaac
agcatctacatgatggccgactccggtgcgcgtggttctgcggcacagattcgtcagctg
gcaggtatgcgtggtctgatggcgaagccggatggctccatcatcgaaacgccaatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatttccacgcacggtgcgcgt
aaaggtctggcggataccgcactgaaaacagcgaactccggttatctgacgcgtcgtctg
gttgacgtggcgcaggatctggttgtgaccgaagacgattgtggcaccctcgaaggtatc
accatgaccccggttatcgagggtggtgatgttaaagagccgctgcgcgatcgcgtactg
ggtcgtgtgactgctgaagacgttctgaagccgggtaccgcagacattctggttccgcgt
aacacactgctgcacgagcactggtgtgacctgctggaagcgaactctgttgactccgtg
aaagtgcgttccgtcgtatcctgtgacaccgactttggtgtttgtgcgcactgctatggt
cgtgacctggcgcgtggccacatcatcaacaaaggcgaagctatcggcgttatcgcggca
cagtccatcggtgagccgggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggcggctgaatccagcatccaggtgaaaaacaaaggtagcatcaagctc
agcaacgcgaagtcggttgttaactccgcaggtaagctggttgtgacctctcgtaacacc
gagctgaaactgatcgacgaattcggccgtaccaaagaaagctataaagtgccttacggt
gcggtaatggcgaagggtgacggcgagcaggttgcaggcggcgaaaccgtagcaaactgg
gatccgcacaccatgccggttatcaccgaggtgtctggtttcattcgcttcaccgatatg
atcgacggccagacgattacccgtcagaccgacgaactgaccggtctgtcttccctggtg
gttctggactctgcagaacgtactaccggtggtaaagacctgcgtccggcactgaaaatc
gttgacgctaacggcgacgacgtcctgatcccgggcaccgacatgccggctcagtacttc
ctgccgggtaaagcgattgttcagctggaagacggtattcagatcagctccggtgacacc
ctggcgcgtattcctcaggaatccggcggtaccaaggatattaccggtggtctgccgcgc
gttgcggacctgttcgaagcacgtcgtccgaaagagccggcaatcctggcggaaatcagc
ggtatcatttccttcggtaaagagaccaaaggtaaacgccgtctggtgatcacgccggtt
gatggcagcgatccgtacgaagagatgattccgaaatggcgtcagctcaacgtgtttgaa
ggcgaacgcgtagaacgcggcgacgttgtttccgacggtccggaagcgccgcacgacatt
ctgcgtctgcgtggcgttcacgcggtaacccgttacatcgtgaacgaagtgcaggacgtt
taccgtctgcagggcgttaagatcaacgataagcacatcgaagttatcgttcgtcagatg
ctgcgtaaagccactatcgtgaacgcgggcagctccgagttcctcgaaggtgagcaggtt
gaatactcccgcgttaagatagctaaccgcgatctggaagcggatggcaagattggcgca
accttcgcgcgcgatctgctgggtatcaccaaagcgtctctggcgaccgagtccttcatc
tctgcggcatcgttccaggaaacgacccgcgttctgaccgaagcggccgttgcgggcaaa
cgcgacgaactgcgcggtctgaaagagaacgtcatcgtgggtcgtctgatcccggcgggt
accggttatgcgtaccaccaggacagaatccgccgtcgtgccgcgggcgaagcgccggca
gcaccgcaggtgagcgcagaagaagcctctgccagcctggcagagctgctgaacgcaggc
ctgggcggttctgacaacgagtaa
DBGET
integrated database retrieval system
