Candidatus Electrothrix scaldis: SD837_12300
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Entry
SD837_12300 CDS
T11025
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
esd Candidatus Electrothrix scaldis
Brite
KEGG Orthology (KO) [BR:
esd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
esd03019
]
SD837_12300 (hrpB)
Enzymes [BR:
esd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SD837_12300 (hrpB)
Messenger RNA biogenesis [BR:
esd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SD837_12300 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
CON_HrpB
ResIII
AAA_19
AAA_22
AAA_30
nSTAND3
AAA_25
Motif
Other DBs
NCBI-ProteinID:
WPD20980
LinkDB
All DBs
Position
2830274..2832790
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AA seq
838 aa
AA seq
DB search
MLLPDHLPVYKILPQLEAALAEQGCAVLTAPPGSGKTTLVPLALQDAPWLQGKKILLLEP
RRIAARLAAEYMSELCQEPVGQIVGYQIRFERRISVQTKVEVITEGILCRRLQQDPELSD
IGLVIFDEFHERSLDSDLAFTLCLDVLSGLREDLRILVMSATMDAEAVSSLLGNGPIIKG
EGQIFPVRKEFFPPLPQYASSHPDDLARSTSRAIRQVLTQEQGDLLVFLPGRGEIRRVQE
QLRDLEKLIVHPLHGSLKSAEQEAALRPDPAGRQRIILATTIAETSVTIEGISAVLDSGW
KRGPRFDGNSGLSRLDTVRISRASAEQRAGRAGRLGPGTCYQLWDKGVDMGLQAYDQPEI
AQADLAPLVLELAHWGVTEPAQLSWLTLPPAAAFAQGKELLQRLGALDRLGKITDIGRAM
AGFPLHPRLSRMLLMAGKEDRQTAIDLAALLSEADILSGHDSVDLEDRLHCLQRFRGQGR
AAVQGMGGNPGACARVEQSSRQLAALLKGKSVEKKEILSVGGLLALAWPDRVALRRSLGS
YKLVSGRGGLLHAHDPLTAAQWLVVPSLDAGRQNGRIFLAARLEQDEVEALFAEELREED
EVLWDAQAERVVARCVVRLGQVLLSEKPLLQSDPTAVQDALLAGIRSLGLESLPWSAKAR
QLQVRLICLRSWQPEAEWPDFSEANLLADLEKWLGPYLAGLRSIKDCAGLNLEQILLARL
SFQQQQALERDAPTHWQVPSGSRITLEYRPEEPPILAVRLQEVFGLAETPAICQGRVPVL
LHLLSPARRPVQITQDLRGFWESSYFAVQKEMKGRYPKHHWPDKPWAAVASAGVKRRK
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
gtgctcctccctgatcatctccctgtttataagatattgccccagcttgaggcggcccta
gctgagcaaggctgtgctgtcctgactgccccgccaggttcgggaaagaccaccctggtg
ccccttgccctccaggatgccccgtggctgcaagggaaaaaaatcctcctgcttgagccc
cgaagaatcgcggcccggctggctgctgagtatatgagtgaactctgccaggagccggtc
gggcagatcgtgggataccagattcgctttgagcgcaggatttccgtccagaccaaggtg
gaggtaatcactgagggcatcctctgtcgtcgtctccagcaagacccggagctgagcgat
attggtttggtgatttttgatgaatttcatgagcgcagcctggattcagacttggctttt
accctgtgcctggatgtgctttccggcctgcgcgaggatctccgaatcctggtgatgtcc
gccactatggatgccgaggcggtgagtagcctgctgggcaatggccctattatcaagggg
gaagggcagatttttccggtgcgcaaagagtttttcccgcccttaccccaatacgcctcc
agtcatcctgatgatctggctcgcagcaccagtcgggcaatccggcaggtcctgacgcag
gaacagggcgatctgctggtcttcctgcccggcaggggcgagatccggcgggtccaggaa
cagctccgcgatctggaaaagcttattgttcatcctttgcacggcagcctgaaatcggca
gagcaggaagctgctctgcgccctgatccagcgggccgccaacggatcatcctggccacc
accattgccgagaccagtgtcactattgaagggatcagtgcagtgcttgatagcggctgg
aagcggggcccacgttttgacggcaactccgggctctctcgcctggatacggtacggatc
tccagggcctcggctgaacaacgggcaggcagggcagggcgtcttggaccgggaacctgt
taccagctctgggataagggcgttgatatggggctccaggcctatgatcagccagagatt
gcccaggcggatctggccccactggtgctggaattggcccattggggtgtgacggaacca
gctcagctttcctggttgacactcccgccagcagcagcttttgcccagggcaaggaactg
ttgcaaagattaggcgccttggacagactgggaaagatcaccgacattggtcgggcaatg
gctggctttcccctccatccccgcctgagcaggatgctgctcatggcaggcaaggaggac
cggcagacggctatcgatctagcggccctgctctctgaggcggatatcctgtcagggcat
gacagtgtcgacctggaagaccgattgcattgcctgcaacgctttcgtgggcagggaagg
gctgctgttcagggcatgggaggaaatccaggggcctgcgcgcgggtggagcagagttcg
cggcaattggctgccctgctcaaggggaaatctgtggagaaaaaggagatactttctgtt
ggtggcttgctggccttggcttggccggaccgagtagctctgcgtcgcagtttgggaagc
tataaattggtctccgggcggggtgggcttctccatgctcacgatcctttgacagcggcc
cagtggctggtggtcccttcccttgatgcgggcaggcagaacggaaggatcttccttgct
gcccggttggagcaggatgaggtggaggccttatttgcagaggagctgagggaagaggac
gaagtgctttgggatgcccaggcagagcgggtggttgctcgctgcgtggtccggctgggg
caggtgctgctcagtgagaaaccgcttcttcaatctgatcccaccgccgtgcaggatgcc
ctgctcgcaggtatccgatccttggggcttgaatccttaccctggtctgcaaaggcccgc
cagcttcaggtccggctcatctgtcttcgttcctggcagcctgaggctgagtggccggat
ttttccgaggcaaacctgctcgcggatcttgagaaatggttagggccttatctggctggt
cttagatcaatcaaggactgcgcaggtctgaacttggaacagattctcctggcacgcctg
agttttcagcaacagcaagcactggagcgggatgcgccgacccattggcaggtgcccagt
gggtcccggattaccctggagtatagacctgaagagccacctatcctggcggttcgcctt
caggaggtctttgggctagctgaaacaccagcaatctgccagggaagggtgcctgtgctc
cttcatctgctttctcctgctcgcaggccggttcagatcacccaggatctgcgtgggttc
tgggaaagcagctattttgccgtgcagaaggagatgaaagggcgttatcccaagcatcac
tggcctgataaaccttgggccgcagtggcaagcgctggggtaaaacgaaggaaatga
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