Candidatus Electrothrix scaldis: SD837_18375
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Entry
SD837_18375 CDS
T11025
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
esd Candidatus Electrothrix scaldis
Brite
KEGG Orthology (KO) [BR:
esd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
esd03032
]
SD837_18375 (gyrB)
03400 DNA repair and recombination proteins [BR:
esd03400
]
SD837_18375 (gyrB)
Enzymes [BR:
esd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
SD837_18375 (gyrB)
DNA replication proteins [BR:
esd03032
]
Prokaryotic type
DNA Topoisomerases
SD837_18375 (gyrB)
DNA repair and recombination proteins [BR:
esd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SD837_18375 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
HATPase_c_3
Toprim_4
GyrB_hook
DUF4853
PEPcase_2
Motif
Other DBs
NCBI-ProteinID:
WPD22158
LinkDB
All DBs
Position
complement(4230723..4233134)
Genome browser
AA seq
803 aa
AA seq
DB search
MSEQEKASYGAEQIKVLDGLEAVRKRPAMYIGNTAEEGLHHLIYEVVDNSIDEALAGHCD
RIRVVIRDNGGVSVEDNGRGIPVDKHPTEDMTALELVMTTLHAGGKFDHSSYKVSGGLHG
VGVSVVNALSTAVTAEIKRNGSVYRQTYEYGDRTSELEVIGTSEETGTTITFQPDPTIFT
ETVVFKYETVRNRLRELAFLNRGIRIFLKDERSGAEDEFHFEGGIVEYVEYLNRRRTAIH
PTPIFIEGEKDQVQVEVSLQYFDGYSERLASFVNNINTREGGSHVAGFRAALTKCINKYA
TDDVVPKNLRAKMGGDDVREGLTAIVSVRVPNPQFEGQTKTKLGNAEVKSIVSTVCHEKL
SAYLEENPQVAKQILSKAVDAARAREAAKRARDLSRKKGGTSVMMAGKLAECQSKNPEER
ELFIVEGDSAGGSAKQGRDRSIQAILPLRGKIMNVEKARFDKILDSEEIKQLIASLGTGI
GREEFDEEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRQMLPLVEKGYVYIGQPPLYRLG
RGKKEQYFINDDALNNYLYDQAAQSILIRRENGEEIQGQVLVNILKKLTFFGRVNSFLER
MNIQEKLTVFLLENDVHSADQFQDKAFLEGLLEKLAPLDAVVGDIRVCRWRPSCYETDVA
FRGQGHTRITLGPNIPLIPEYRHALDLYPEIKDYISGSFMITKTSSTGLEKEIQADTWHD
LIRLVREETFKGSHLQRYKGLGEMNPEQLWETTMNPENRTLLQVKIEDAESADDLFVTLM
GDKVEPRREFIQNHALEVAELDV
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgagcaggagaaggcgtcctacggggcggagcagattaaggtccttgatgggctg
gaggccgtgcgtaagcgtccggctatgtatatcggtaacactgccgaagaaggtctgcat
catctgatttacgaggtggtggacaactccattgatgaggccttagccggtcattgtgat
cgtatccgggtggttatccgagacaatggtggtgtttctgtcgaggataacgggcgtggt
attcctgtggataaacatcccacagaggatatgaccgccttagaactggttatgacaacc
ctgcatgcaggcggtaaatttgaccattcctcgtacaaggtttctggtggtttacacggg
gttggtgtttccgtggtcaatgccctgagtacggcagtcaccgctgagattaaacgtaac
gggagtgtctatcggcagacctatgagtatggtgacagaaccagcgagctggaggttatc
ggtaccagcgaggaaacaggaactactattacctttcagccggacccgacgatttttact
gaaaccgttgtttttaaatatgagacagtgcgtaaccgtctccgcgaacttgctttcctg
aatcgggggatcagaattttcctcaaggacgagcggagtggggctgaggacgagtttcat
tttgaaggcgggattgtggagtacgtagagtacctgaaccgcaggcggaccgctattcat
ccaacccccatttttattgaaggagaaaaggatcaggtccaggttgaggtctctctccag
tattttgatggctattctgagcgtcttgcctcctttgttaataatattaacacgagagag
ggtggttcccatgttgcgggatttcgggctgcgctgactaaatgtatcaataagtacgcc
acagatgatgtcgtaccgaaaaacctgcgagccaaaatgggcggtgatgatgtccgggaa
ggattgacggccattgtttcagtgcgggttcctaatccccagtttgagggccagaccaag
acgaagctgggcaatgctgaagtcaagtccattgtctccaccgtctgtcatgaaaaactg
agcgcctacctggaggaaaatccccaagttgctaagcagatcctcagcaaggctgttgat
gcggcccgggctcgggaagcggcaaaaagggcgagggacctttcccggaaaaagggcggc
acctcggtgatgatggctggtaaattagcagaatgtcagtccaagaacccggaagaacgg
gagctctttattgtggagggtgattctgcgggtggttctgccaaacaggggagggaccgc
tctattcaggccatcctgcccttgcgcggtaaaatcatgaacgtggaaaaggcccgtttt
gataaaattcttgattccgaggagatcaaacagctgatcgcctccctggggactggtatt
ggccgggaagaatttgatgaggaaaaactccgttatcacaagatcatcattatgaccgat
gcggatgtggacggtgcccatatcaggacccttctgcttacctttttttatcgccaaatg
cttcccctggtggaaaagggctatgtctatattggtcagcctcccctgtaccgtttagga
cgggggaaaaaggagcagtactttattaatgatgatgccctgaataactatctttacgat
caggcagctcagtccatcctgattcgtcgggaaaacggcgaagagattcaggggcaggtc
ctggttaatatactcaaaaaattaactttctttggtcgtgttaacagttttctggaacgg
atgaacattcaggaaaagctgaccgtttttctgctggaaaacgatgtgcattctgcagat
cagtttcaggacaaggcctttctggaaggcttgttggaaaaattggctccgttggatgcg
gttgttggagacatccgtgtttgtcgttggcgtccaagctgttatgagacggatgttgcc
tttcgcggccaggggcataccaggataactctcggtcccaacattccccttattcccgag
tatcgtcatgcccttgatctgtatccagagattaaggactacatctccgggagctttatg
atcaccaagacttcaagcaccggactggaaaaggaaattcaggccgatacctggcatgac
ctgattcgtttggtgcgggaagagacctttaagggtagccatctgcaacgctataaaggt
cttggtgagatgaatcctgagcagttatgggaaaccaccatgaatcctgaaaatcgtacc
ctcttgcaggtgaagattgaggatgctgaatctgctgatgatctctttgttaccctgatg
ggtgataaggttgagccgcgacgggaattcattcaaaatcacgcgttagaagtcgctgag
ctggacgtgtga
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integrated database retrieval system
